Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31673
         (412 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   2.7  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   2.7  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   2.7  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   2.7  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   3.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -3

Query: 245  CIVNCLR-QACSGGLFW 198
            C++  LR Q C+GGL W
Sbjct: 1121 CVLGELRKQYCAGGLHW 1137



 Score = 20.2 bits (40), Expect = 8.2
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 224  QACSGGLFW 198
            Q C  GLFW
Sbjct: 2263 QVCPNGLFW 2271


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 290 WMHSGVFFFQKTFCFCIVNCLRQACSGG 207
           W+    FF Q   C+C +   R+A   G
Sbjct: 412 WLSCSSFFQQFFHCYCPIKFGRKADPNG 439


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 118 RSRPVHV*RTPDDPQPVLDAFRTNQYSQNNP 210
           R   +H   +   PQPVL  ++  Q  +N P
Sbjct: 177 RQHVMHNLSSVPQPQPVLPTYKWMQVKRNVP 207


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 118 RSRPVHV*RTPDDPQPVLDAFRTNQYSQNNP 210
           R   +H   +   PQPVL  ++  Q  +N P
Sbjct: 177 RQHVMHNLSSVPQPQPVLPTYKWMQVKRNVP 207


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 118 RSRPVHV*RTPDDPQPVLDAFRTNQYSQNNP 210
           R   +H   +   PQPVL  ++  Q  +N P
Sbjct: 177 RQHVMHNLSSVPQPQPVLPTYKWMQVKRNVP 207


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 4   SVHNENDTSCPVRVKT 51
           +V NEN T+CP +  T
Sbjct: 118 TVANENTTNCPEQKNT 133


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,465
Number of Sequences: 336
Number of extensions: 1573
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)