Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31673
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub...    25   3.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   3.5  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   4.6  

>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
           subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 109 SHHRSRPVHV*RTPDDPQPVLDAFRTNQ 192
           +HH   P H+  +PD+ + +LD ++  +
Sbjct: 140 THHELVPKHILLSPDEKKELLDRYKLRE 167


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 121  SRPVHV*RTPDDPQPVLDAFRTNQYSQNNPPEQA 222
            ++PV +      P P+ +   T Q +QN PP  A
Sbjct: 997  TKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPA 1030


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 290 WMHSGVFFFQKTFCFCI 240
           W+++ +FF  + FCF I
Sbjct: 345 WVYACIFFLTRVFCFLI 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,948
Number of Sequences: 5004
Number of extensions: 26129
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)