Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31673
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0002 - 6858257-6861205                                           29   1.4  
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    29   1.9  
12_02_0346 - 17776871-17781445                                         27   5.8  
12_02_0343 - 17748882-17753396                                         27   5.8  
11_04_0328 + 16437947-16438091,16439953-16440062,16440446-164405...    27   5.8  
04_01_0424 - 5601690-5601915,5602099-5602187,5603298-5603378,560...    27   7.7  
02_01_0035 - 220036-221419,222050-222801                               27   7.7  

>10_03_0002 - 6858257-6861205
          Length = 982

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 82  DDDTVRSTPSHHRSRPVHV*RTPDDPQPV 168
           D+ +V S P HHR R V   R+P   +PV
Sbjct: 365 DERSVHSPPDHHRERRVERPRSPPRRRPV 393


>03_05_0725 +
           27155736-27155746,27155798-27155949,27156108-27158068,
           27159169-27159397,27159506-27159634,27159725-27159838,
           27160059-27160258,27160301-27160599,27160713-27160923,
           27161017-27161172,27161290-27161447,27161532-27161724,
           27162015-27162406,27162537-27162717,27162802-27163031,
           27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 94  VRSTPSHHRSRPVHV*RTPDDPQPV 168
           +RS PSHHR+  +HV +T +D +PV
Sbjct: 82  LRSWPSHHRA--LHVKKTIEDAEPV 104


>12_02_0346 - 17776871-17781445
          Length = 1524

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 104 LLATIGLGLSTFSVRQMILNQC*TRLGQTSTPRTTRRSKLVADN*QCKNKTSFEKKKLLN 283
           LL  +   +S+  +R   LN   T       P++ R   ++ DN   +N+ +FE  K  +
Sbjct: 575 LLHELATNISSHEIR--CLNSS-TLSSINEIPKSIRHMSIIVDNRHVENRIAFENHK-KD 630

Query: 284 ASTXGN 301
            ST GN
Sbjct: 631 LSTLGN 636


>12_02_0343 - 17748882-17753396
          Length = 1504

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 104 LLATIGLGLSTFSVRQMILNQC*TRLGQTSTPRTTRRSKLVADN*QCKNKTSFEKKKLLN 283
           LL  +   +S+  +R   LN   T       P++ R   ++ DN   +N+ +FE  K  +
Sbjct: 576 LLHELATNISSHEIR--CLNSS-TLSSINEIPKSIRHMSIIVDNRHVENRIAFENHK-KD 631

Query: 284 ASTXGN 301
            ST GN
Sbjct: 632 LSTLGN 637


>11_04_0328 +
           16437947-16438091,16439953-16440062,16440446-16440514,
           16440840-16440955,16441049-16441103,16441206-16441326,
           16441541-16441635,16441728-16441826
          Length = 269

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 275 VFFFQKTFCFCIVNCLRQACSGGLFWEYWFVL 180
           + FF KTF       L++ C     WEY F +
Sbjct: 157 LLFFAKTFSASFQRLLKKQCGNRATWEYPFAV 188


>04_01_0424 -
           5601690-5601915,5602099-5602187,5603298-5603378,
           5604875-5605240
          Length = 253

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 49  THIFAASE-P*EDDDTVRSTPSHHRSRPVHV*RTPDDPQPVL 171
           T + AA+  P +  DT+R+  +    R VHV   PD  +P+L
Sbjct: 56  TEVVAATVGPSQSADTLRTALAMGADRAVHVLHDPDPSRPLL 97


>02_01_0035 - 220036-221419,222050-222801
          Length = 711

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 82  DDDTVRSTPSHHRSRPVHV*RTPDDPQPVLDAFRTNQYSQNNPPEQA 222
           D D + S+ S  R+ P     TPD P P   A+    Y +N P + A
Sbjct: 255 DIDYIHSSSSSKRAPPKDKPATPDSPAPPPPAY----YFKNKPDDNA 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,766,951
Number of Sequences: 37544
Number of extensions: 176928
Number of successful extensions: 379
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)