Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31673
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22844| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_42040| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_17430| Best HMM Match : Kazal_1 (HMM E-Value=1e-07)                 27   6.0  
SB_52803| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               27   7.9  
SB_42041| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_22844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 126 PRPMVARSRADRVIIFSRFACCEYVSLN 43
           PRP+V  + AD V++  RFA   Y S+N
Sbjct: 190 PRPLVEVTEADLVLVAERFADKRYDSIN 217


>SB_42040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +1

Query: 88  DTVRSTPSHHRSRPVHV*RTPDDPQPVLDAFRTNQYSQNNPPE 216
           D + + P H  ++P H+   PD      D      Y  NN P+
Sbjct: 97  DNLNNKPDHLNNKPDHLNNKPDHLNNKSDHLNNKPYHLNNEPD 139


>SB_17430| Best HMM Match : Kazal_1 (HMM E-Value=1e-07)
          Length = 396

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 399 HFILFKHN-PLRIYTL*IXTERTSXXXXXXNKDKLPYVDAFRSFFFSKDVLFLH 241
           HFIL +    L + T  +  E  +       KD+L YV A  +++ + D  F+H
Sbjct: 67  HFILHRGRVTLELSTSDVKCELVTFSPKNFAKDRLVYVQASINYYNTPDQTFVH 120


>SB_52803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 88  DTVRSTPSHHRSRPVHV*RTPD 153
           D + +TP H  +RP H+  TPD
Sbjct: 79  DHMNNTPDHLNNRPDHMNNTPD 100


>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 716

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +1

Query: 64  ASEP*EDDDTVRSTPSHHRSRPVHV*RTPDDPQPVLDAFRTNQYSQNNPPEQACRRQL 237
           +SE     D      + HR R ++  +     +   D +RTN Y  ++PP+   R +L
Sbjct: 500 SSEVLSPPDMYADNLNSHRDRNLYSDQFRGRQEVFFDQYRTNCYHNDSPPDPLNRARL 557


>SB_42041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +1

Query: 88  DTVRSTPSHHRSRPVHV*RTPDDPQPVLDAFRTNQYSQNNPPE 216
           D + + P H  ++P H+   PD      D      Y  NN P+
Sbjct: 178 DHLNNKPDHLNNKPDHLYNKPDHLNNKPDHLNNKPYHLNNMPD 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,530,400
Number of Sequences: 59808
Number of extensions: 209663
Number of successful extensions: 491
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)