Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31673
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   2.4  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   5.4  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   5.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   9.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 290 WMHSGVFFFQKTFCFCIVNCLRQACSGG 207
           W+    FF Q   C+C V   R+A   G
Sbjct: 416 WLSCSSFFQQFFHCYCPVRFGRKADPNG 443


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 309 CLNXFNLARCVQ 344
           C   +NLA+CVQ
Sbjct: 123 CNKIYNLAKCVQ 134


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 309 CLNXFNLARCVQ 344
           C   +NLA+CVQ
Sbjct: 123 CNKIYNLAKCVQ 134


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 308 KINCXTWMHSG 276
           +IN  +W+HSG
Sbjct: 184 RINFGSWVHSG 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,226
Number of Sequences: 438
Number of extensions: 1902
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)