Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31673
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    30   0.53 
At5g57870.2 68418.m07239 eukaryotic translation initiation facto...    26   8.6  
At5g57870.1 68418.m07238 eukaryotic translation initiation facto...    26   8.6  

>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
            protein [Arabidopsis thaliana] GI:21743571; contains Pfam
            profile PF00730: HhH-GPD superfamily base excision DNA
            repair protein
          Length = 1729

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 94   VRSTPSHHRSRPVHV*RTPDDPQPVLDAFRTNQYSQNN--PPEQAC 225
            V   P  HR       R PDDP P L A  T   + N+  PPEQ C
Sbjct: 1544 VYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKC 1589


>At5g57870.2 68418.m07239 eukaryotic translation initiation factor
           4F, putative / eIF-4F, putative similar to SP|Q03387
           Eukaryotic initiation factor (iso)4F subunit P82-34
           (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
           profiles PF02854: MIF4G domain, PF02847: MA3 domain
          Length = 776

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 189 PVLPEQPAGASLSQTIDNAKTKRLLKK 269
           PV   QP+G  LS+ +   KTK LL++
Sbjct: 597 PVEKPQPSGPKLSEEVLQRKTKSLLEE 623


>At5g57870.1 68418.m07238 eukaryotic translation initiation factor
           4F, putative / eIF-4F, putative similar to SP|Q03387
           Eukaryotic initiation factor (iso)4F subunit P82-34
           (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
           profiles PF02854: MIF4G domain, PF02847: MA3 domain
          Length = 780

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 189 PVLPEQPAGASLSQTIDNAKTKRLLKK 269
           PV   QP+G  LS+ +   KTK LL++
Sbjct: 601 PVEKPQPSGPKLSEEVLQRKTKSLLEE 627


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,891,412
Number of Sequences: 28952
Number of extensions: 143217
Number of successful extensions: 293
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)