Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31672
         (315 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    20   5.4  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          20   5.4  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 239 SFTCNS*YSFTCNYR*RFTCRYRSSFNYI 153
           ++  N  YS   NY+  F+C+Y    N +
Sbjct: 214 NYQYNQAYSNYNNYQEGFSCQYYQGKNCV 242


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 239 SFTCNS*YSFTCNYR*RFTCRYRSSFNYI 153
           ++  N  YS   NY+  F+C+Y    N +
Sbjct: 234 NYQYNQAYSNYNNYQEGFSCQYYQGKNCV 262


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,317
Number of Sequences: 336
Number of extensions: 890
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5836655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)