Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31672
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   0.89 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   3.6  
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...    24   4.7  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       24   4.7  
SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me...    24   6.3  
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...    23   8.3  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -3

Query: 307  TSVGCTCSSSATGTGISRGTSDKASLVIPNTVSLATIGEDSLAGIEAVSITSXALISLGT 128
            + V  + ++SATG+  S   +   S    ++V+ A+  + S + I A S+T  +  S+ T
Sbjct: 960  SEVDPSTAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVAT 1019

Query: 127  S 125
            +
Sbjct: 1020 A 1020



 Score = 25.4 bits (53), Expect = 2.0
 Identities = 15/78 (19%), Positives = 34/78 (43%)
 Frame = -3

Query: 307  TSVGCTCSSSATGTGISRGTSDKASLVIPNTVSLATIGEDSLAGIEAVSITSXALISLGT 128
            +S     ++S TG+  S   +   +    ++V+ A+  + S + I   S+T  +  S+ T
Sbjct: 999  SSTSSIAAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSIAVASVTGSSTSSVAT 1058

Query: 127  SGAXSCKXTGADSXTXKG 74
            + A     +   + +  G
Sbjct: 1059 ASATDSSTSSVATASITG 1076



 Score = 23.4 bits (48), Expect = 8.3
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -3

Query: 313 VGTSVGCTCSSSATGTGISRGTSDKASLVIPNTVSLATIGEDSLAGIEAVSITSXALISL 134
           V +S     SSS   +  S      +SLV   + SL+ I   SL+ + A+S +S    S+
Sbjct: 678 VSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLS-LTAMSSSSAIPTSV 736

Query: 133 GTS 125
            +S
Sbjct: 737 NSS 739


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 171 SIPASESSPIVASETVLGITSEALSDVPLEIPVPVAELEQVQPTE 305
           +IP ++S  I+  +++  ITS+    + L++ +P  E  Q  P E
Sbjct: 644 NIPITDSHKILFKKSIEVITSKIRRLLKLDVYLPTVESLQKLPAE 688


>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 180 ASESSPIVASETVLGITSEALSDVPLEIPVPVAELEQVQPTEVP 311
           A E +P +A   + G  ++A    P+EI +  A L+ +QP   P
Sbjct: 229 AHEIAPFIACGDLDGYDADAT--YPVEINMKKATLDVIQPPTAP 270


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 126 EVPXEIKAXDVIETASIPASESSPIV 203
           E P E+ A  + E+ + P S SSP V
Sbjct: 389 EAPAEVGAISLTESFNSPVSNSSPNV 414


>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
           RNA-mediated gene silencing |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 289 CSSSATGTGISRGTSDKASLVIPNTVSLAT-IGEDSLAGIEAVSITSXALISLGTSG-AX 116
           C S A   G+  G+S K    +  T+S  T +   +++ + +V ++S   I++   G A 
Sbjct: 229 CGSGAGAVGVYIGSSQKTPTSLSFTISQGTKLSRQAISKV-SVDVSSNKSIAVFVGGQAK 287

Query: 115 SC 110
           +C
Sbjct: 288 TC 289


>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 313 VGTSVGCTCSSSATGTGISRGTSDKASLVIPNTVSLATIGEDSLAGI 173
           V  S G    ++  G GIS     +  L++ NT+ +   G  ++ G+
Sbjct: 23  VFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGL 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 913,464
Number of Sequences: 5004
Number of extensions: 13282
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)