Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31672
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 29 1.0
07_01_0247 + 1813979-1814207,1815293-1815351,1815725-1815802,181... 28 1.3
08_02_0907 - 22485714-22486859,22487836-22487882,22488456-224888... 27 3.1
11_01_0071 + 565349-565814,566626-566692,567255-567288,567747-56... 27 4.1
09_02_0045 + 3479503-3480285 27 4.1
06_03_0854 + 25400855-25403741,25406174-25407708 26 5.4
03_05_1117 - 30526126-30526640,30527114-30527186,30527310-305278... 26 5.4
03_04_0214 + 18688480-18688832,18688956-18688999,18689039-186891... 26 5.4
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22... 26 7.1
03_05_0314 - 23035295-23036342,23036552-23036616 26 7.1
03_05_0035 + 20075691-20075695,20075720-20076326 26 7.1
11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767 25 9.4
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683... 25 9.4
01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801 25 9.4
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 28.7 bits (61), Expect = 1.0
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = -3
Query: 310 GTSVGCTCSSSATGTGISRGTSDKASLVIPNTVSLATIGEDSLAGIEAVSITSXALISLG 131
G+ G SSS+ TG+S G+S S ++ S + G S++G + + +S +
Sbjct: 274 GSMSGSGSSSSSGSTGMSYGSSGAGSFSGSSSGSNSNAG--SMSGANSGAGSSSSAYGAS 331
Query: 130 TSGAXSCKXTGADS 89
SG+ S +G+ S
Sbjct: 332 GSGSNSMSDSGSSS 345
>07_01_0247 +
1813979-1814207,1815293-1815351,1815725-1815802,
1816369-1816536,1816664-1817578
Length = 482
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +3
Query: 168 ASIPASESSPIVASETVLGITSEALSDVPLEIP 266
++ P ++ P+ ++ + G+ S +L+ +PLE+P
Sbjct: 19 SATPKGKTIPVKCTDCLPGVASRSLTVIPLEVP 51
>08_02_0907 -
22485714-22486859,22487836-22487882,22488456-22488830,
22489339-22489500,22490325-22490439
Length = 614
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 274 TGTGISRGTSDKASLV-IPNTVSLATIGEDSLAGIEAVSITSXALISL 134
TGTG+ GTS+K ++V PN + + D +A A+ + + SL
Sbjct: 500 TGTGVDAGTSEKNAIVEAPNNPAPLMV-LDQVAADAAMDVQEDIMFSL 546
>11_01_0071 +
565349-565814,566626-566692,567255-567288,567747-567860
Length = 226
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 307 TSVGCTCSSSATGTGISRGTSDKASLVIPNTVS 209
T+ TCS+S + T +S+ +S PN +S
Sbjct: 60 TAAASTCSASPSHTPVSKPSSASGETTAPNPIS 92
>09_02_0045 + 3479503-3480285
Length = 260
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 90 ESAPVXLHEXAPEVPXEIKAXDVIETASIPASESSPIVASETVLGITSEAL 242
E APV L P+VP +K+ +V + I+ E IT E+L
Sbjct: 37 EDAPVCLMAKEPKVPSPLKSFNVDLVSDEEDEVEDEIMDDELFKSITKESL 87
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 99 PVXLHEXAPEVPXEIKAXDVIETASIPA---SESSPIVASETVLGITSEALSDVPLEIPV 269
P L A V ++ + A +PA S++SP+ + AL VP+++P
Sbjct: 263 PATLLSDASPVIVQVPVPPSSDAAPVPAPTLSDASPVPVQVPAPPSSDVALVPVPVQVPA 322
Query: 270 PVA 278
P +
Sbjct: 323 PTS 325
>03_05_1117 -
30526126-30526640,30527114-30527186,30527310-30527848,
30528215-30528332
Length = 414
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 171 SIPASESSPIVASETVLGITSEALSDVPLEIP 266
S P++E SP TVLGI D P P
Sbjct: 239 STPSAEVSPATGGVTVLGIQQAPEEDAPPGFP 270
>03_04_0214 +
18688480-18688832,18688956-18688999,18689039-18689101,
18689883-18689956,18691526-18692017
Length = 341
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 198 IVASETVLGITSEALSDVPLEIPVPVAELEQVQPTEVP 311
IV S VL T+ +L++ PL +P P+ E+ + P E P
Sbjct: 275 IVTSVPVLQSTN-SLTE-PLPVPEPIEEVMAISPFEAP 310
>08_01_0030 +
222748-222829,223224-223448,223800-224204,224773-225389
Length = 442
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 165 TASIPASESSPIVASETVLGITSEALS 245
T+ PASES+P+++S L S ALS
Sbjct: 266 TSKPPASESTPLLSSVIHLSAESTALS 292
>03_05_0314 - 23035295-23036342,23036552-23036616
Length = 370
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 90 ESAPVXLHEXAPEVPXEIKAXDVIETASIPASESSPIVASETVLGITSEAL 242
E AP+ L P+VP +K+ +V + ++ E IT E+L
Sbjct: 320 EDAPICLMAKEPKVPSPLKSFNVDLVSDEEDEVEDEVMDDELFKSITKESL 370
>03_05_0035 + 20075691-20075695,20075720-20076326
Length = 203
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 90 ESAPVXLHEXAPEVPXEIKAXDVIETASIPASESSPIVASETVLGITSEAL 242
E AP+ L P+VP +K+ +V ++ E IT E+L
Sbjct: 108 EDAPICLMAKEPKVPSSLKSINVDLVCDEEDDVEDEVMDEELFKSITKESL 158
>11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767
Length = 355
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 168 ASIPASESSPIVASETVLGITSEALSDVPLEIPVP 272
A +P ES A +LGI E + V L +P+P
Sbjct: 38 ARVPPPESPDAGARRELLGIDVEHIVGVALPLPLP 72
>06_01_0893 -
6834350-6834464,6835042-6835218,6835301-6835350,
6836348-6836416,6836495-6836593,6836681-6836759,
6837604-6837704,6838645-6838713,6839548-6839588,
6839793-6841159,6841472-6841575,6841914-6842351,
6843040-6843567
Length = 1078
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 111 HEXAPEVPXEIKAXDVIETASIPASE--SSPIVASETVLGITSEALSDVPLEIPVPVA 278
H P P + +I+ + A+ ++ +VAS V+ +++ SD+ L++PV A
Sbjct: 642 HMYEPSAPPQEDPLQLIKQMPVAAAAVATAAVVASSMVVA-AAKSNSDIKLDVPVAAA 698
>01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801
Length = 721
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 174 IPASESSPIVASETVLGITSEALSDVPLEIPVPVAELEQV 293
+P+ +SP A+ + TS+ + LE+ PV +L V
Sbjct: 124 LPSQPTSPERATSPAITSTSDQTQFLALEVSTPVLKLSSV 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,826,639
Number of Sequences: 37544
Number of extensions: 84788
Number of successful extensions: 262
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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