Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31672
         (315 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zi...    28   1.1  
At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zi...    28   1.1  
At4g28180.1 68417.m04040 expressed protein                             27   2.6  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    27   2.6  
At4g39110.1 68417.m05538 protein kinase family protein contains ...    27   3.5  
At1g72090.1 68414.m08333 radical SAM domain-containing protein /...    27   3.5  
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila...    26   4.6  
At1g67020.1 68414.m07620 hypothetical protein                          26   4.6  
At1g04210.1 68414.m00411 leucine-rich repeat family protein / pr...    26   6.1  

>At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 635

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -3

Query: 277 ATGTGISRGTSDKASLVIPNTVSLATIGEDSLAG 176
           A  TG+S+G++ +++L   N ++LA   E+ LAG
Sbjct: 60  AHATGVSKGSATRSALQKSNHLALAKFLENDLAG 93


>At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 634

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -3

Query: 277 ATGTGISRGTSDKASLVIPNTVSLATIGEDSLAG 176
           A  TG+S+G++ +++L   N ++LA   E+ LAG
Sbjct: 59  AHATGVSKGSATRSALQKANHLALAMFLENELAG 92


>At4g28180.1 68417.m04040 expressed protein 
          Length = 256

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 174 IPASESSPIVASETVLGITSEALS---DVPLEIPVPVAELEQVQPT 302
           + A++  P +  E+V  +  +++S    +P+ +PVPV +L    PT
Sbjct: 15  VAAAQIPPPLEEESVKEVVVQSVSVSVPIPISVPVPVPDLVPSAPT 60


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
           TIGR01612: reticulocyte binding protein; contains
           TIGRFAM TIGR00864: polycystin cation channel protein;
           similar to fimbriae-associated protein Fap1
           [Streptococcus parasanguinis] (GI:3929312)
          Length = 1498

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +3

Query: 75  PLXVXESAPVXLHEXAPEVPXEI-KAXDVIETA---SIPASESSPIVASETVLGITSEAL 242
           P+ V E  PV +    P V  E+ ++ DV  T+    + AS+   +  S TV  + SE  
Sbjct: 293 PVTVLE--PVSVENGHPPVESELERSSDVPFTSVAEKVNASDGEVLPDSGTVDVVVSEVS 350

Query: 243 SDVPLE 260
           SDVP E
Sbjct: 351 SDVPAE 356


>At4g39110.1 68417.m05538 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 878

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +3

Query: 153 DVIETASIPASESSPIVASETVLGITSEALSDVPLEIPVPVAELEQVQPTEV 308
           DV+   S+P S+ SPI  S T    T+EA +     +PVP A++E+   T V
Sbjct: 819 DVVTPGSVPVSDPSPITPSVT----TNEAAT-----VPVP-AKVEENSGTAV 860


>At1g72090.1 68414.m08333 radical SAM domain-containing protein /
           TRAM domain-containing protein contains Pfam profiles
           PF00919: UPF0004 family protein, PF04055: radical SAM
           domain protein, PF01938: TRAM domain
          Length = 601

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 286 SSSATGTGISRGTSDKASLVIPNTVSLATIGEDSLAGIEAVSI 158
           S SA  T I+RG S K  LVI   V   +     L G+  V +
Sbjct: 115 SQSAMSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGV 157


>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
            CAF protein [Arabidopsis thaliana] GI:6102610; contains
            Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
            Helicase conserved C-terminal domain, PF03368: Domain of
            unknown function, PF00636: RNase3 domain, PF00035:
            Double-stranded RNA binding motif
          Length = 1676

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 307  TSVGCTCSSSATGTGISRGTSDKASLVIPN 218
            T  GC  + SATG     GT   A L+I N
Sbjct: 1470 TKNGCCLTVSATGRNKREGTKKAAQLMITN 1499


>At1g67020.1 68414.m07620 hypothetical protein
          Length = 659

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 311 WYFSRLHLLEFRXWNRYFER 252
           W+   +  LEFR WN + +R
Sbjct: 156 WFLREMSTLEFRDWNSFEQR 175


>At1g04210.1 68414.m00411 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1112

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -3

Query: 298 GCTCSSSATGTGISRGTSDKASLVIPNTVSLATIGEDSLAGIEAVSITSXALISLG 131
           GC+ SS +TG G+ R  S      + +T ++  +    ++G     I +     LG
Sbjct: 778 GCSVSSLSTGKGVERANSSLIRCKLGSTEAVVKMRTLEVSGASLDDIRTFEYTCLG 833


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,742,819
Number of Sequences: 28952
Number of extensions: 69316
Number of successful extensions: 224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)