Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31666
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    26   1.8  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    25   2.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   4.3  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   4.3  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    24   5.6  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    24   7.5  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    23   9.8  

>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 195 LKEALDDDNKPHVIVAVRGSYSYTNTDGXPETITYFADETG 317
           LKE  ++DN P     ++ ++ Y N +G  E ++ F    G
Sbjct: 76  LKELPENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNG 116


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +3

Query: 138 AYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGXPETI 293
           A   N    + ++      +++++D   +PHV+VA  G  +        ETI
Sbjct: 97  ALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETI 148


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -1

Query: 236  NNVRLVV---VVESLLQLTSFATHDAVGSLEIVVVSSIGAGVEFRPNDLRVVL 87
            +N+ LVV   +  S  Q+TS     ++ SLE  ++  +GA    R +D +V L
Sbjct: 956  SNIALVVDELINLSSKQITSHPQSLSIASLEASLIFVLGASSIIREDDSKVTL 1008


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 195 LKEALDDDNKPHVIVAVRGSYSYTNTDGXPETITYFADE 311
           +K  +DDD+   ++  +R  YS+   +  PE  T F D+
Sbjct: 605 VKYTIDDDSVERIMNCIRAIYSF---EELPEFQTVFLDD 640


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 138 AYNYNFETSNGIVRSETGELKEALDDDNKPHVIVA 242
           A    F+  NG+ ++    + EAL   +K H++ A
Sbjct: 65  AMKITFDLINGVYKTVPDRVPEALVSTSKKHLVAA 99


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 78   PPTEDYPKIVRSEFDASPDGAYNYNFE 158
            PP +D+P +    F+   +  YNY  E
Sbjct: 1255 PPVKDFPTLEFGSFEKIYNVGYNYGKE 1281


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 182 ATHDAVGSLEIVVVSSIGAGV-EFRPN 105
           A+H ++G L  +  SSI +G   F+P+
Sbjct: 240 ASHSSIGDLTTITQSSISSGSGSFKPS 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,195,301
Number of Sequences: 5004
Number of extensions: 19962
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)