Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31666
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0454 + 9514706-9515776 28 2.2
11_06_0015 + 19281918-19282043,19282263-19282365,19282514-192825... 27 5.1
11_01_0760 + 6385866-6385955,6386629-6386682,6386863-6387012,638... 27 5.1
11_01_0753 + 6333019-6333108,6333427-6333603,6333783-6333836,633... 27 5.1
05_05_0089 - 22305727-22306115,22306206-22306311,22306386-223067... 27 5.1
03_02_0497 - 8891852-8892270,8892368-8892473,8892573-8892911,889... 27 5.1
10_07_0138 + 13325418-13325954 26 6.7
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 26 6.7
04_04_1173 + 31469357-31469920 26 8.9
04_04_0406 + 24978845-24978970,24979073-24979142,24979541-249795... 26 8.9
02_05_0381 - 28483425-28483458,28483588-28483658,28483746-284838... 26 8.9
>09_02_0454 + 9514706-9515776
Length = 356
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 173 DAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGS 72
D VGS +V V V D R VLCRGG+
Sbjct: 187 DHVGSTAVVAVVEESRVVVANCGDSRAVLCRGGA 220
>11_06_0015 +
19281918-19282043,19282263-19282365,19282514-19282581,
19282687-19282842,19282950-19283078,19283161-19283278,
19283368-19283462,19283579-19283731,19283822-19283917,
19284095-19284196
Length = 381
Score = 26.6 bits (56), Expect = 5.1
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +3
Query: 93 YPKIVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNT 272
+ +I+ EF D + FE N + L+ + DD HVI+ + + + +
Sbjct: 60 HERIILPEFPYLTDENGDIYFEVDN-----DDALLESIMGDDKTAHVIIGLDNTQVFADL 114
Query: 273 DGXPETITYFADE 311
D + T FA E
Sbjct: 115 DLAAASATEFAQE 127
>11_01_0760 +
6385866-6385955,6386629-6386682,6386863-6387012,
6387120-6387461
Length = 211
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 50 ESYNDDQFHF**FWFV 3
ESYND Q HF WFV
Sbjct: 34 ESYNDSQTHFTTSWFV 49
>11_01_0753 +
6333019-6333108,6333427-6333603,6333783-6333836,
6334015-6334164,6334271-6334612
Length = 270
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 50 ESYNDDQFHF**FWFV 3
ESYND Q HF WFV
Sbjct: 93 ESYNDSQTHFTTSWFV 108
>05_05_0089 -
22305727-22306115,22306206-22306311,22306386-22306730,
22306847-22307257
Length = 416
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 197 QLTSFATHDAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGG 75
+L + A D VGS +V V V D R VLCR G
Sbjct: 202 ELQTPARCDHVGSTAVVAVVGPNRVVVANSGDSRAVLCRAG 242
>03_02_0497 -
8891852-8892270,8892368-8892473,8892573-8892911,
8893065-8893415
Length = 404
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 173 DAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGS 72
D VGS +V V V D R VLCRGG+
Sbjct: 188 DHVGSTAVVAVLGPRHVVVANCGDSRAVLCRGGA 221
>10_07_0138 + 13325418-13325954
Length = 178
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 195 AHQFRYARCRWKSRNCSCKLHRGWRRIQTER 103
+ ++R +R RW+SR CS + R WRR + R
Sbjct: 88 SRRWRRSR-RWRSR-CSRRWRRSWRRRRCSR 116
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 177 RSETGELKEALDDDNKPHVIVAVRGSYSYTNTDG 278
R E+G L+ L + +PH+++AV + Y T G
Sbjct: 274 RYESGALRRLLRREYRPHLVMAVLITVFYEMTGG 307
>04_04_1173 + 31469357-31469920
Length = 187
Score = 25.8 bits (54), Expect = 8.9
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2
Query: 65 RHRCPPYRG 91
RHRCPP+RG
Sbjct: 73 RHRCPPHRG 81
>04_04_0406 +
24978845-24978970,24979073-24979142,24979541-24979556,
24979813-24979930,24980015-24980137,24980249-24980408,
24980470-24980546,24980635-24980687,24981263-24981317,
24981664-24981858
Length = 330
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 245 HSNNNVRLVVVVESLLQLTSFATHDAVGSLEIVVV 141
H NN V L V+ ESLLQ + ++ +++V
Sbjct: 263 HLNNGVELSVICESLLQEAITRDPPSTDNMSVILV 297
>02_05_0381 -
28483425-28483458,28483588-28483658,28483746-28483819,
28483975-28484050,28484129-28484206,28485557-28485589
Length = 121
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 78 PPTEDYPKIVRSEFDASPD 134
PP +DY K++ ++DAS D
Sbjct: 8 PPHKDYYKVLEVDYDASDD 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,404,910
Number of Sequences: 37544
Number of extensions: 161919
Number of successful extensions: 471
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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