Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31666
         (341 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)               30   0.43 
SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.75 
SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)                  29   1.3  
SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.7  
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.7  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 28   2.3  
SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         28   2.3  
SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_26806| Best HMM Match : Annexin (HMM E-Value=0)                     27   3.0  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    27   4.0  
SB_19205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)                    27   5.3  
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 27   5.3  
SB_38207| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_9558| Best HMM Match : DEAD (HMM E-Value=0)                         26   7.0  
SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)                      26   7.0  
SB_47811| Best HMM Match : ig (HMM E-Value=5.2e-13)                    26   9.2  
SB_37089| Best HMM Match : Ribosomal_S9 (HMM E-Value=9.9)              26   9.2  
SB_9647| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.2  

>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
          Length = 488

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +3

Query: 111 SEFDASPDGAYNYNFETSNGIVRSETGE 194
           +E DA PDG+YN++ ++   +V +ETGE
Sbjct: 218 TEEDAKPDGSYNFDHKS---VVNTETGE 242


>SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 78  PPTEDYPKIVRSEFDASPDGAY 143
           PPT+DY +  RS+ D S DG Y
Sbjct: 17  PPTKDYDRRSRSQDDDSDDGCY 38


>SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)
          Length = 599

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 126 SPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVR-GSYSYTNTDGXPETITYF 302
           SP G Y    E +  I R E  +L       +K H ++AVR G Y   + D    T+T+ 
Sbjct: 94  SPSGHYYKVCEPNFFIGRDENLDLTLKSRSVDKKHAVIAVRDGRYELYDMDSLNGTVTHS 153

Query: 303 A 305
           A
Sbjct: 154 A 154


>SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 116 IRRQPRWSLQLQFRDFQRHRA*RNW*AEGGSRRRQ 220
           +RR+  WS+Q++  +  RH   + W   GG ++R+
Sbjct: 3   VRRKDAWSMQVRQVEHPRHSYVQMWRKFGGPKKRE 37


>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 114 EFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVA 242
           E D+     YNY+    NG+  S+ G+L      DN  HV+ A
Sbjct: 65  EPDSEQADGYNYDTSHHNGVATSQRGQLARLAMGDNN-HVLNA 106


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 200 GGSRRRQQASRYCCCA 247
           GGSRRR   S++CC A
Sbjct: 97  GGSRRRNSKSKFCCFA 112


>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 162 SNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGXPETITYFADET 314
           S  + +  TG  K  LDD  KPHV+  ++ SY     D   E   +   ET
Sbjct: 204 SKTVTKMFTGFRKLTLDDLRKPHVVKDIQ-SYILNRLDDDSELRKHLTRET 253


>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +3

Query: 126 SPDGAYNYNFETSNGIVRS----ETGELKEALDDDNKPHVIVAVRGSYSY 263
           SPDG  + NFE  NG + +        + +A++ D++  V+V ++G Y++
Sbjct: 205 SPDGICSVNFEFYNGAMSTAQCRRLSSVLQAVERDDRVKVVV-LKGGYNF 253


>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 829

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -1

Query: 224 LVVVVESLLQLTSFATHDAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGSDDGSHKGES 45
           LV  ++S  Q+T+   H A+ + + + V+ + AG +      R+ L R  S  G  + ES
Sbjct: 274 LVKAIQSPTQMTADKLHSALQNKDTLTVARMIAGADPTARFFRMRLARDTSATGVVECES 333

Query: 44  YND 36
            +D
Sbjct: 334 ADD 336


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 244 CVEATVTRTLTXNLKPLRTSLTRLDT 321
           C   T    +T N KP +TSLTRL++
Sbjct: 348 CPVDTKAMNITVNYKPEKTSLTRLES 373


>SB_19205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -1

Query: 101 LRVVLCRG--GSDDGSHKGESYND 36
           +RVV+C G  G DDG+  GES  D
Sbjct: 66  VRVVVCCGESGGDDGNSSGESGGD 89


>SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)
          Length = 734

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -1

Query: 182 ATHDAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGSDDGSHKGESYNDDQF 27
           A+ DA+   E       GAG  F    +  V   G S+    K  S + DQF
Sbjct: 227 ASQDAIADTESKASQGDGAGEVFNAEAVETVPVNGNSNTKPKKKSSVSIDQF 278


>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1182

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = -1

Query: 176 HDAVG-SLEIVVVSSIGAGVEFRPNDLRVVLCRGGSDDGSHKGESYND 36
           H+ VG + E   V   G   +  PND +   C GGS         Y D
Sbjct: 351 HNTVGKNCEACAVGFYGIATKGTPNDCKRCQCPGGSSGNKFSESCYVD 398


>SB_38207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 204 PPSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GSP 88
           PPS    R+    W +R CS  L +G +  +  R+   P
Sbjct: 105 PPSEGAKRHEFATWHARGCSADLEKGVKSNEEGRASSQP 143


>SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 123 ASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHV 233
           ASP    N   ET   +   E    K  +D  N+PH+
Sbjct: 502 ASPINMVNITIETDGRVESHEVFRAKLTVDTANRPHI 538


>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 436

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 195 LKEALDDDNKPHVIVAVRG 251
           +K+AL   NKPHV++A  G
Sbjct: 116 MKQALSLANKPHVVIATPG 134


>SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)
          Length = 623

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 140 SSIGAGVEFRPNDLRVVLCRGGSDDGSHKGESYNDDQ 30
           S +    E +PND ++ + +  SD+G  KG++  D +
Sbjct: 201 SDMSNPTEEKPNDTKLGIVKEKSDEGVKKGDTLADKE 237


>SB_47811| Best HMM Match : ig (HMM E-Value=5.2e-13)
          Length = 278

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 244 CVEATVTRTLTXNLKPLRTSLTRLDT 321
           C   T T ++T   KP +TSLTRL++
Sbjct: 98  CPAYTRTTSITVIYKPEKTSLTRLES 123


>SB_37089| Best HMM Match : Ribosomal_S9 (HMM E-Value=9.9)
          Length = 141

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 186 FRYARCRWKSRNCSCKLHRGWRRIQTERS*G 94
           FR   C W+ R+   +LHRG  R +T  S G
Sbjct: 46  FRLRNC-WEGRSGELELHRGGGRSRTSGSPG 75


>SB_9647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 198 SAHQFRYARCRWKSRNCSCKLHRGWR--RIQTERS 100
           S+H+  + +  W SR  S KLHR     R++ ERS
Sbjct: 152 SSHRVIFQQSAWHSRFASIKLHRQKTAGRLRLERS 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,544,366
Number of Sequences: 59808
Number of extensions: 187961
Number of successful extensions: 548
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)