Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31666
(341 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24290.2 68417.m03488 expressed protein 27 2.5
At4g24290.1 68417.m03487 expressed protein 27 2.5
At3g44060.1 68416.m04720 F-box family protein contains F-box dom... 27 2.5
At1g18990.1 68414.m02362 expressed protein contains Pfam profile... 27 2.5
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 26 5.7
At3g50720.1 68416.m05549 protein kinase, putative similar to pro... 26 7.6
At5g59220.1 68418.m07422 protein phosphatase 2C, putative / PP2C... 25 10.0
At3g27320.1 68416.m03414 expressed protein low similarity to PrM... 25 10.0
At3g11410.1 68416.m01392 protein phosphatase 2C, putative / PP2C... 25 10.0
At1g60600.1 68414.m06821 UbiA prenyltransferase family protein c... 25 10.0
At1g07430.1 68414.m00793 protein phosphatase 2C, putative / PP2C... 25 10.0
>At4g24290.2 68417.m03488 expressed protein
Length = 606
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 149 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 66
V + SIG G + DLR+ C+GGS D
Sbjct: 13 VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39
>At4g24290.1 68417.m03487 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 149 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 66
V + SIG G + DLR+ C+GGS D
Sbjct: 13 VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39
>At3g44060.1 68416.m04720 F-box family protein contains F-box domain
Pfam:PF00646
Length = 427
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 124 PAPMELTTTISRLPTASCVAKL 189
P M+LT + +LPTASC K+
Sbjct: 403 PKKMQLTEDLLKLPTASCKLKI 424
>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 524
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 168 GIVRSETGELKEALDDDNKP 227
G++R E GE +E LD++ KP
Sbjct: 401 GLLREERGEAEEFLDEETKP 420
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 100 RSFGLNSTPAPMELTTTISRLPTASCVAK 186
R FG N PAP E ++ P A+ V++
Sbjct: 13 RRFGFNDRPAPSESLRSVPCTPEANTVSR 41
>At3g50720.1 68416.m05549 protein kinase, putative similar to
protein kinase ATN1 [Arabidopsis thaliana]
gi|1054633|emb|CAA63387
Length = 377
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 94 TLRSFGLNSTPAPMELTTTIS 156
TL+ F LNS P+P++L ++S
Sbjct: 132 TLQRFMLNSRPSPLDLKVSLS 152
>At5g59220.1 68418.m07422 protein phosphatase 2C, putative / PP2C,
putative ABA induced protein phosphatase 2C, Fagus
sylvatica, EMBL:FSY277743
Length = 413
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 173 DAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGG 75
DAVGS +V V + + D R VLCR G
Sbjct: 218 DAVGSTAVVSVLTPEKIIVANCGDSRAVLCRNG 250
>At3g27320.1 68416.m03414 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 460
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +3
Query: 141 YNYNFETSNGIVRSETGELKEALDDDNK--PHVIVAVRGSYSYTNTDGXPE 287
Y+ T N I S+ + +L N H + + R SY YT PE
Sbjct: 94 YSGKARTLNNIAGSDLLSRRNSLGSSNSLLSHKVESRRNSYGYTTGSSSPE 144
>At3g11410.1 68416.m01392 protein phosphatase 2C, putative / PP2C,
putative identical to protein phosphatase 2C (PP2C)
GB:P49598 [Arabidopsis thaliana]; contains Pfam profile
PF00481: Protein phosphatase 2C; identical to cDNA
protein phosphatase 2C GI:633027
Length = 399
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 173 DAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGG 75
DAVGS +V V + + D R VLCR G
Sbjct: 218 DAVGSTAVVSVVTPEKIIVSNCGDSRAVLCRNG 250
>At1g60600.1 68414.m06821 UbiA prenyltransferase family protein
contains Pfam profile PF01040: UbiA prenyltransferase
family
Length = 287
Score = 25.4 bits (53), Expect = 10.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 56 CGYRHRCPPYR 88
CGY ++CPP+R
Sbjct: 110 CGYVYQCPPFR 120
>At1g07430.1 68414.m00793 protein phosphatase 2C, putative / PP2C,
putative similar to GB:CAB90633 from [Fagus sylvatica]
Length = 442
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 173 DAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGG 75
DAVGS +V V + + D R VLCR G
Sbjct: 230 DAVGSTAVVSVITPEKIIVANCGDSRAVLCRNG 262
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,463,149
Number of Sequences: 28952
Number of extensions: 114795
Number of successful extensions: 391
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -