Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31661
         (403 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   3.4  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   6.0  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    20   7.9  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = +3

Query: 231 NTXTNGANSGP----RRRMSSNALKRSRPSAR 314
           +T T   N  P    +RR ++ A KRSR + R
Sbjct: 126 STTTQNKNDDPSYWEKRRKNNEAAKRSRDARR 157


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -3

Query: 278 AHPPPWPAVCAIRXC 234
           +HPP W   C  + C
Sbjct: 51  SHPPQWTWQCINQRC 65


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 272 PPPWPAVCAIRXCIPS 225
           PP  PAVC +  C  S
Sbjct: 161 PPCDPAVCVLPDCFCS 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,832
Number of Sequences: 336
Number of extensions: 1033
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)