Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31661
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741...    27   4.2  
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990...    27   4.2  
03_05_0682 - 26691973-26692623,26692681-26692788,26694741-266948...    27   7.3  
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581...    27   7.3  

>05_07_0274 -
           28873531-28873644,28873727-28873981,28874111-28874179,
           28874277-28874415,28874511-28875076,28875225-28875326,
           28875425-28875491,28875576-28876072,28876148-28876212,
           28876470-28876567,28876652-28876694,28876870-28876963,
           28877325-28877360,28877454-28877542,28877667-28877788,
           28878193-28878404
          Length = 855

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 340 PXSKEKGRRRKESARNXREET 402
           P SKEK + RKE++ N  E+T
Sbjct: 765 PESKEKEKERKENSENKEEKT 785


>04_04_0596 -
           26497863-26497913,26498010-26498081,26499015-26499093,
           26499440-26499553,26499822-26499871,26500353-26500398,
           26501100-26501719
          Length = 343

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 325 RRRKAPXSKEKGRRRKESARNXREE 399
           RRRK    +E+ RRRK+  R  R+E
Sbjct: 138 RRRKEREEEERRRRRKDKERRKRKE 162


>03_05_0682 -
           26691973-26692623,26692681-26692788,26694741-26694807,
           26695311-26695422,26695743-26695787,26696163-26696235,
           26696321-26696362
          Length = 365

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -1

Query: 139 HRDFFFYFLLLRARIFLLVST 77
           +RDF F FL+  AR+FL+VST
Sbjct: 109 YRDFCFQFLV--ARLFLMVST 127


>01_05_0080 -
           17957276-17957676,17957810-17957921,17958001-17958126,
           17958199-17958331,17960069-17960193,17960314-17960409,
           17960430-17960621,17960694-17960800,17961318-17961426,
           17961538-17961624,17963017-17963103,17964254-17964379
          Length = 566

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 144 PLLNKRVREIQNSSSVKTRSGRTWMNS*RNTXTN-GANSGPRRRMSSNALKRSRPSA 311
           PLL    R + N+ SVK R     ++  R + T+   +  P ++M+++    S  SA
Sbjct: 420 PLLRSNKRVVTNNPSVKVRLWSIQISDKRKSSTDLSTSQPPLKKMTTDGAMNSMTSA 476


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,706,025
Number of Sequences: 37544
Number of extensions: 136006
Number of successful extensions: 397
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)