Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31661
         (403 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23930.1 68416.m03006 expressed protein                             33   0.094
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   2.7  
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra...    27   3.5  
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea...    27   4.7  
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein...    27   6.2  

>At3g23930.1 68416.m03006 expressed protein
          Length = 224

 Score = 32.7 bits (71), Expect = 0.094
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 152 KQEGEGDPEFIKRQDQKRSDLDEQLKEYXNEWRKQR 259
           K +  G    IK +D++   +  QLKE   EWRK+R
Sbjct: 21  KDQSRGRRHLIKERDEREKVMFLQLKEAEREWRKER 56


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 144 PLLNKRVREIQNSSS-VKTRSGRTWMNS*RNTXTNGANSGPRRRMSSNALKRSR 302
           PL   R R I  ++S  K+ SG     S   + ++ A+  PR+R  SN+ +RSR
Sbjct: 211 PLRGSRSRSISKTNSGSKSYSGERKSRS--TSQSSDASISPRKRRLSNSRRRSR 262


>At2g11810.1 68415.m01269 1,2-diacylglycerol
           3-beta-galactosyltransferase, putative /
           monogalactosyldiacylglycerol synthase, putative / MGDG
           synthase, putative identical to
           monogalactosyldiacylglycerol synthase type C
           [gi:9927295] from Arabidopsis thaliana, similar to MGDG
           synthase type A [gi:9884651] from Glycine max
          Length = 465

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 171 IQNSSSVKTRSGRTWMNS*RNTXTNGANSGPRRRMSSNALKRSRPSARFXV 323
           + N + V TRS +       +  +N  N    ++MS NALK S+P A F +
Sbjct: 395 VDNGAGVFTRSPKETAKIVADWFSN--NKEELKKMSENALKLSQPEAVFDI 443


>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
           shock protein 83 (HSP83) nearly identical to SP|P27323
           Heat shock protein 81-1 (HSP81-1) (Heat shock protein
           83) {Arabidopsis thaliana}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00183: Hsp90 protein
          Length = 705

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 152 KQEGEGDPEFIKRQDQKRSDLDEQLKEYXNEW 247
           K+E EG+ E +  + +K     +++KE  +EW
Sbjct: 233 KKENEGEVEEVDEEKEKDGKKKKKIKEVSHEW 264


>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 275

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 325 RRRKAPXSKEKGRRRKESAR 384
           RRRKA  SK+K ++RKE  R
Sbjct: 217 RRRKAKKSKKKQKQRKERRR 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,812,789
Number of Sequences: 28952
Number of extensions: 97836
Number of successful extensions: 274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)