Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31660
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)                  32   0.32 
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)               28   4.0  
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)                   27   9.2  

>SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1157

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 226 TSPSGAXLKSAREVRQRILQTGKAXXLSYXQLLAIISTIIFA 351
           T P G  L+ AR  RQ +L+T KA       LL +I   +FA
Sbjct: 443 TPPKGEELEEARMYRQNVLETLKAVTEIVFYLLFVICLFVFA 484


>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 284  CKIRCLTSRADFKXAPDGEVSSSXQPASGNNLITGVWNV 168
            C++    SR   K +  GE+SS   P    N +T +W++
Sbjct: 1520 CRVSSEYSRNTRKDSSSGEISSYEYPNKYENHVTCIWSI 1558


>SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 647

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 112 MSRRRLDGSCSNFDYPSRGTFHTPVIRLL 198
           ++ R  DG+C+N  +P  G   TP+ RLL
Sbjct: 144 LNYRSADGTCNNLQHPMWGGSLTPLKRLL 172


>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 266 TSRADFKXAP---DGEVSSSXQPASGNNLITGVWNVPLDG*SKLLHEPS 129
           T  AD+   P      +++S + ASG + ++ VW+    G + +  EP+
Sbjct: 496 TEHADYNVKPIWKKSHIAASGEAASGGSAVSDVWSSSASGANMIQGEPA 544


>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 232  ERFHRLHSRLRVTILSQGYGMFLLTDSRNYC 140
            ++F R HS  + + LSQG    + T+ R YC
Sbjct: 1667 DKFERGHSPRQPSSLSQGEQKLVTTEYREYC 1697


>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
          Length = 717

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 290 PVCKIRCLTSRADF-KXAPDGEVSSSXQPASGNNLITGVWNVP 165
           P+     LTS  +  K A +  +S++  P S NN++T   N+P
Sbjct: 72  PISADNMLTSADNMPKSADNMPISANNMPISANNMLTSADNMP 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,845
Number of Sequences: 59808
Number of extensions: 281642
Number of successful extensions: 815
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)