Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31660
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57660.1 68418.m07205 zinc finger (B-box type) family protein...    27   5.7  

>At5g57660.1 68418.m07205 zinc finger (B-box type) family protein
           contains Pfam domain, PF00643: B-box zinc finger
          Length = 355

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -1

Query: 135 AIKTSSAHWGRRGVECHWCSSLNFPVRCSIGSFHQSLVDQKTIHN 1
           +IK+ S  WG     C  C S+   V C + S    +     IH+
Sbjct: 7   SIKSISGGWGAAARSCDACKSVTAAVFCRVDSAFLCIACDTRIHS 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,161,658
Number of Sequences: 28952
Number of extensions: 195186
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)