Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31659
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    33   0.009
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    31   0.028
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    30   0.086
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    29   0.20 
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    27   0.46 
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    26   1.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   2.4  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    23   7.5  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    23   7.5  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    23   9.9  

>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 33.1 bits (72), Expect = 0.009
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 184 GKTFLITGANSGXGLETGKALAK-RKARVIFACTDIAKAKE 303
           GKT LITGA+SG G  T   +AK  K ++I A    +  +E
Sbjct: 6   GKTILITGASSGIGKSTAFEIAKVAKVKLILAARRFSTVEE 46


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 31.5 bits (68), Expect = 0.028
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 187 KTFLITGANSGXGLETGKALAKRKARVIFA 276
           K + I G N G GL   K L+ RK  V+FA
Sbjct: 6   KIYFIAGGNRGIGLSLVKELSNRKGTVVFA 35


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 29.9 bits (64), Expect = 0.086
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 187 KTFLITGANSGXGLETGKALAKRKARVIFA 276
           K + I G N G GL   K L+ R+  V+FA
Sbjct: 6   KIYFIAGGNRGIGLSLVKELSNREGTVVFA 35


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 28.7 bits (61), Expect = 0.20
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 187 KTFLITGANSGXGLETGKALAKRKARVIFA 276
           K + I G N G GL   K L+ R+   +FA
Sbjct: 6   KVYFIAGGNRGIGLSLVKELSSREGTTVFA 35


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 27.5 bits (58), Expect = 0.46
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 184 GKTFLITGANSGXGLETGKALAKRKARV 267
           GKT LITG + G G    KA A   + V
Sbjct: 9   GKTTLITGGSGGIGFSIAKAFAAAGSNV 36


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 184 GKTFLITGANSGXGLETGKALAKRKARVIFA 276
           G  ++I G N G GL   K L+ ++   +FA
Sbjct: 6   GIVYVIVGGNRGIGLSLVKELSNKEGVTVFA 36


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 236 PVSSPXPLFAPVIRKVLPXXHVLXVHLPQ 150
           P+  P  +   ++R +LP  H+L V  P+
Sbjct: 545 PIYKPSNMLIDLLRSLLPYDHLLHVRQPR 573


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 165 STFAPIXGCSVYVLSQSPXGSEMG 94
           S  +P  GC++ + SQ P G+ +G
Sbjct: 116 SLSSPSQGCTLTISSQVPLGAGLG 139


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 296 AFAMSVHAKITRAFLLAKALPVSSPXPLFAPVIRK 192
           +F      K+TR   L K+L   +P  L +P +RK
Sbjct: 324 SFDRKFSPKLTRTPSLTKSLDPGTPTSLKSPSLRK 358


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 294 LCNVCACKDNAGFSFSQGFTCFK 226
           L ++ AC  N+G S   GF  F+
Sbjct: 411 LSSMLACYPNSGISKGYGFVAFR 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,026,577
Number of Sequences: 5004
Number of extensions: 14649
Number of successful extensions: 28
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)