Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31659
(303 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0109 - 863381-863575,863749-863795,863893-863980,864078-86... 40 4e-04
06_01_0199 + 1538124-1538485,1538997-1539076,1539198-1539357,153... 38 0.001
10_08_0836 - 20922861-20923096,20923193-20923340,20923541-209236... 38 0.002
10_08_0835 - 20916364-20916462,20916503-20916549,20916750-209168... 38 0.002
06_03_0618 + 22798419-22798588,22798672-22798771,22798891-227989... 37 0.003
10_08_0505 + 18384392-18384454,18384593-18384679,18385878-183864... 37 0.003
04_04_1598 + 34698260-34698316,34698438-34699544 36 0.005
04_04_0605 + 26549904-26551939,26553931-26554180,26554764-265548... 36 0.005
02_01_0118 + 870911-871203,872559-872679,872975-873092,873218-87... 32 0.075
02_05_0431 + 28933418-28933951,28934066-28934213,28934729-28935030 31 0.13
04_01_0407 - 5350916-5351699,5351930-5351970 29 0.92
04_01_0406 - 5345149-5345935,5346302-5346339 29 0.92
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698... 28 1.2
02_04_0376 - 22474473-22476947 27 2.8
07_01_0986 - 8314733-8314783,8315895-8318381 27 3.7
02_05_0091 + 25745971-25746050,25746196-25746439,25746542-257466... 26 4.9
12_02_1225 - 27164595-27164842,27164959-27165133,27165213-271653... 26 6.5
04_04_0607 - 26564345-26564728,26565187-26565249,26565421-265655... 26 6.5
>03_01_0109 -
863381-863575,863749-863795,863893-863980,864078-864159,
864264-864420,864501-864583,864724-864955,865032-865146
Length = 332
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 190 TFLITGANSGXGLETGKALAKRKARVIFACTDIAKAKE 303
T +ITGA SG G ET + LAKR ARV+ ++ A++
Sbjct: 34 TAIITGATSGIGAETARVLAKRGARVVIPARNVKAAED 71
>06_01_0199 +
1538124-1538485,1538997-1539076,1539198-1539357,
1539497-1539578,1540080-1540167,1540256-1540302,
1540623-1540865
Length = 353
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 190 TFLITGANSGXGLETGKALAKRKARVIFACTDIAKAKE 303
T +ITGA SG G ET + LAKR AR++ + A E
Sbjct: 37 TAIITGATSGIGAETARVLAKRGARLVLPARSLKAAAE 74
>10_08_0836 -
20922861-20923096,20923193-20923340,20923541-20923621,
20924407-20924532
Length = 196
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Frame = +1
Query: 184 GKTFLITGANSGXGLETGKALAKRKARVIFACTDIA---KAKE 303
G ++TGA+SG GLET + LA R RV+ A ++A KA+E
Sbjct: 112 GLAAVVTGASSGIGLETTRVLALRGVRVVMAVRNVAAGHKARE 154
>10_08_0835 -
20916364-20916462,20916503-20916549,20916750-20916864,
20916933-20917011,20917365-20917518,20917660-20917739,
20918170-20918401,20918755-20918860
Length = 303
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 184 GKTFLITGANSGXGLETGKALAKRKARVIFACTDIA 291
G +ITGA+SG GLET + +A R RV+ A ++A
Sbjct: 29 GLVAVITGASSGIGLETARVMALRGVRVVMAVRNVA 64
>06_03_0618 +
22798419-22798588,22798672-22798771,22798891-22798971,
22799131-22799180,22799302-22799452,22800027-22800083,
22800171-22800292,22800397-22800601
Length = 311
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 184 GKTFLITGANSGXGLETGKALAKRKARVIFAC 279
GK L+TGANSG G T + LA R A V C
Sbjct: 34 GKNCLVTGANSGIGFATAEGLASRGATVYMLC 65
>10_08_0505 +
18384392-18384454,18384593-18384679,18385878-18386409,
18387042-18387564,18387734-18387791
Length = 420
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 190 TFLITGANSGXGLETGKALAKR-KARVIFACTDIAKA 297
T +ITGA+SG GL T KALA+ + V+ C D KA
Sbjct: 87 TAVITGASSGLGLATAKALAETGRWHVVMGCRDFLKA 123
>04_04_1598 + 34698260-34698316,34698438-34699544
Length = 387
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 196 LITGANSGXGLETGKALAKR-KARVIFACTDIAKA 297
+ITGA+SG GL KALA+ K V+ AC D KA
Sbjct: 77 VITGASSGLGLAAAKALAETGKWHVVMACRDFLKA 111
>04_04_0605 +
26549904-26551939,26553931-26554180,26554764-26554829,
26555194-26555388,26555830-26556141,26556537-26556595,
26557138-26557381,26557466-26557528,26557997-26558386
Length = 1204
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 184 GKTFLITGANSGXGLETGKALAKRKARVIFACTDIAKAKE 303
G+ L+TG N G GLET + LA R RV+ + A+ E
Sbjct: 678 GRIALVTGGNKGVGLETCRQLASRGLRVVLTARNEARGLE 717
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 196 LITGANSGXGLETGKALAKRKARVIFACTDIAKAKE 303
++TG N G GLE + LA V+ D + E
Sbjct: 976 VVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVE 1011
>02_01_0118 +
870911-871203,872559-872679,872975-873092,873218-873354,
873583-873684,873862-873954,875047-875119,875213-875478
Length = 400
Score = 32.3 bits (70), Expect = 0.075
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 184 GKTFLITGANSGXGLETGKALAKRKARVIFACTDIAKAKE 303
G +F++TGA SG GLE + LA V+ A A+E
Sbjct: 80 GVSFVVTGATSGIGLEIARQLALAGGHVVMAVRRTKLAQE 119
>02_05_0431 + 28933418-28933951,28934066-28934213,28934729-28935030
Length = 327
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 184 GKTFLITGANSGXGLETGKALAKRKARVIFACTDIAKAKE 303
G+ LITG +SG GL A A+ ARV + A+ +E
Sbjct: 36 GRHVLITGGSSGIGLAMATAAAREGARVSILARNAARLEE 75
>04_01_0407 - 5350916-5351699,5351930-5351970
Length = 274
Score = 28.7 bits (61), Expect = 0.92
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 184 GKTFLITGANSGXGLETGKALAKRKARVIFA 276
GK +ITG SG G T + K ARV+ A
Sbjct: 17 GKVAVITGGASGIGACTARLFVKHGARVVVA 47
>04_01_0406 - 5345149-5345935,5346302-5346339
Length = 274
Score = 28.7 bits (61), Expect = 0.92
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 184 GKTFLITGANSGXGLETGKALAKRKARVIFA 276
GK +ITG SG G T + K ARV+ A
Sbjct: 16 GKVAVITGGASGIGACTARLFVKHGARVVVA 46
>07_03_1727 +
29068348-29068571,29069473-29069514,29069593-29069839,
29069936-29070013,29070551-29070736,29070829-29071126,
29071775-29072244
Length = 514
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 196 LITGANSGXGLETGKALAKRKARVIFACTDIAKAKE 303
++TG N G GLE + LA + VI D + K+
Sbjct: 92 VVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKD 127
>02_04_0376 - 22474473-22476947
Length = 824
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 251 LAKALPVSSPXPLFAPVIRKVLPXXHVLXVHLP 153
L ++LPV P L A R P H+L V LP
Sbjct: 46 LPESLPVPLPVRLAAAAARVAAPSRHLLAVALP 78
>07_01_0986 - 8314733-8314783,8315895-8318381
Length = 845
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 257 FLLAKALPVSSPXPLFAPVIRKVLPXXH 174
FLLA + S+P PL A VLP H
Sbjct: 95 FLLASSSSASAPHPLPADAYHAVLPFLH 122
>02_05_0091 +
25745971-25746050,25746196-25746439,25746542-25746628,
25747060-25747245,25747527-25747904
Length = 324
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 196 LITGANSGXGLETGKALAKRKARVIFACTDIAKAKE 303
++TG N G GLE + LA V+ D K +
Sbjct: 30 VVTGGNRGVGLEICRQLASNGILVVLTARDEKKGSQ 65
>12_02_1225 -
27164595-27164842,27164959-27165133,27165213-27165307,
27165391-27165444,27165794-27165868,27165961-27166081,
27166494-27166549,27166698-27166762,27166962-27167050,
27167155-27167812,27168182-27168202,27168777-27168859,
27169081-27169136,27169413-27169619,27170628-27170760
Length = 711
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 192 GFAXXTCIXSTFAPIXGCSVYVLSQSPXGSEMG 94
G + I T A I GCSVY + Q P + +G
Sbjct: 604 GASSNQIILKTMASIFGCSVYTV-QRPDSASLG 635
>04_04_0607 -
26564345-26564728,26565187-26565249,26565421-26565592,
26565707-26565741
Length = 217
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 196 LITGANSGXGLETGKALAKRKARVIFACTDIAKAKE 303
++TG N G GLE + LA V+ D + E
Sbjct: 15 VVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVE 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,626,231
Number of Sequences: 37544
Number of extensions: 94542
Number of successful extensions: 150
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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