Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31659
         (303 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    24   0.47 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   5.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   7.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   7.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.8 bits (49), Expect = 0.47
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 196 LITGANSGXGLETGKALAKRKARVIFACTDIAKAK 300
           L+TGANSG G    + L  +  +VI     + K K
Sbjct: 11  LVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMK 45


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 156 APIXGCSVYVLSQSPXG 106
           A I  C +YVLS +P G
Sbjct: 275 AAITICFLYVLSWTPYG 291


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 251 KEKPALSLHAQTLQR 295
           K  P LSLH Q L R
Sbjct: 296 KAVPPLSLHGQLLWR 310


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 61  WRXAPVIYAXXAHLTTXWRLA*YVN 135
           W   P+I A   HLT    +  +VN
Sbjct: 174 WDQEPIILADELHLTEYKLVEKWVN 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,595
Number of Sequences: 438
Number of extensions: 1215
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)