Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31653
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor...    93   3e-18
UniRef50_UPI00004D976B Cluster: UPI00004D976B related cluster; n...    36   0.41 

>UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor;
           n=1; Bombyx mori|Rep: Larval cuticle protein LCP-30
           precursor - Bombyx mori (Silk moth)
          Length = 239

 Score = 93.5 bits (222), Expect = 3e-18
 Identities = 43/53 (81%), Positives = 43/53 (81%)
 Frame = +2

Query: 14  MRVFLAICLSLTVALAXETGKXTPXQYNRVYXTVXPLVYKPXRYXTDPXRYDP 172
           MRVFLAICLSLTVALA ETGK TP QYNRVY TV P VYKP RY  DP RYDP
Sbjct: 1   MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDP 53



 Score = 75.8 bits (178), Expect = 6e-13
 Identities = 45/100 (45%), Positives = 45/100 (45%)
 Frame = +3

Query: 171 PXRDNSGRYIPDNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDLSKYLGDAYK 350
           P RDNSGRYIPDNS                                 KEDLSKYLGDAYK
Sbjct: 53  PSRDNSGRYIPDNSGAYNGDRGDRGAAGGFYTGSGTAGGPGGAYVGTKEDLSKYLGDAYK 112

Query: 351 GSSIXXXXXXXXXXXXXXXXXXXASKVVTPTYVDSXVVPP 470
           GSSI                   ASKVVTPTYV S VVPP
Sbjct: 113 GSSIVPLPVVKPTIPVPVTPTYVASKVVTPTYVASKVVPP 152


>UniRef50_UPI00004D976B Cluster: UPI00004D976B related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00004D976B UniRef100 entry -
           Xenopus tropicalis
          Length = 205

 Score = 36.3 bits (80), Expect = 0.41
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 403 SHPHTLPARWSHPHTLTAXWSHP 471
           SHP+ LPA +SHP+ L A +SHP
Sbjct: 88  SHPNPLPAPYSHPNPLLAPYSHP 110



 Score = 35.5 bits (78), Expect = 0.72
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +1

Query: 403 SHPHTLPARWSHPHTLTAXWSHP 471
           SHP+ LPA +SHP+ + A +SHP
Sbjct: 58  SHPNPLPAPYSHPNPILAPYSHP 80



 Score = 32.3 bits (70), Expect = 6.8
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 403 SHPHTLPARWSHPHTLTAXWSHP 471
           SHP+ L A +SHP+ L A +SHP
Sbjct: 98  SHPNPLLAPYSHPNPLLAPYSHP 120



 Score = 32.3 bits (70), Expect = 6.8
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 403 SHPHTLPARWSHPHTLTAXWSHP 471
           SHP+ L A +SHP+ L A +SHP
Sbjct: 128 SHPNPLLAPYSHPNPLPAPYSHP 150


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 350,080,302
Number of Sequences: 1657284
Number of extensions: 4674162
Number of successful extensions: 11800
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11750
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)