Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31651
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 175 4e-45
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 29 0.41
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 27 2.2
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 26 2.9
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.8
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 26 3.8
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 5.1
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 5.1
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 25 8.9
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 175 bits (425), Expect = 4e-45
Identities = 83/158 (52%), Positives = 109/158 (68%)
Frame = +2
Query: 41 FEPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNIS 220
F+PL +L+N+++Q SL+WIF SCSLA+Q+SKVR SVL+ISTDPAHN+S
Sbjct: 3 FDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLS 62
Query: 221 DAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAF 400
DAF KF K KV GFDNL AMEIDPN+ + E+ E+ + G+MQ++
Sbjct: 63 DAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQ--ADQQNPNNPLSGMMQDLAFTI 120
Query: 401 PGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLL 514
PGIDEA+++AE++K +K M F V+FDTAPTGHTLR L
Sbjct: 121 PGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFL 158
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 102 SLEGKAELGKLRAVAVSQFSCRKFANLC*SYQLILPTIS 218
+LE E GKLRA+ VS F L S+ I+P ++
Sbjct: 123 ALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVN 161
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +3
Query: 210 TISLMHSTRNFLKYQQRLKGLTTYSLWRLIRML 308
T+ L ++ +F++YQ +K T +W+LI++L
Sbjct: 2 TVILQYAD-HFVEYQNDMKRYDTLHVWKLIKLL 33
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 2.9
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +3
Query: 156 FSCRKFANLC*SYQLILPTISLMHSTRNFLKYQQRLKGLTTYSLWRLIRMLD*QSCLKNI 335
F C KF NL LI T S+ + FL Y + + L ++L QSC+ +
Sbjct: 168 FGCIKFGNLNLDKALICSTCSISAALLLFLLYVRLPFWTLKHMFSGLFQVLGVQSCVVIV 227
Query: 336 LKENLRL*D 362
K + L D
Sbjct: 228 TKGLMYLFD 236
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 61 VEKCYRSKVVKVDFRWRERRSWENYVQLQSRSSAVE 168
+++ +S +D + RER WEN +Q S+ E
Sbjct: 146 IQQALQSISHSIDLQERERIEWENTIQTSSQQKYEE 181
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -1
Query: 306 TFGSISIANRLSNPLTFVGTLENFWSNASEILWAGSVDMIN 184
T G +S L NP F G E W LW + +N
Sbjct: 226 TQGIMSARGLLENPALFAGYEETPWGCVERFLWYSTSYSLN 266
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 466 TKVHAFY*FHHLSIAHSLINT 404
T+VHAFY + L + S INT
Sbjct: 265 TRVHAFYSLNDLKLETSTINT 285
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 442 FHHLSIAHSLINTRKSSNNLLHDTLVQS 359
F +L I H L NT + + ++HD + ++
Sbjct: 95 FENLEILHQLSNTPRDKDAVIHDKIEEN 122
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 230 DQKFS-KVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKG 373
DQ ++ KV T +KG +NL + EL +E EA LD G
Sbjct: 690 DQGYAFKVITNLKGMENLPNLAYASKAERLELLQEVLLQNEEAADLDDG 738
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,167
Number of Sequences: 5004
Number of extensions: 35114
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -