Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31651
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   4e-17
SB_24393| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05)                  29   2.3  
SB_31842| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)                 27   9.2  

>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 37/53 (69%), Positives = 46/53 (86%)
 Frame = +2

Query: 356 MRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLL 514
           M + K ++ E++GAFPGIDEAMS+AEVM+LV  M+FS V+FDTAPTGHTLRLL
Sbjct: 2   MSMGKAMISELLGAFPGIDEAMSFAEVMRLVNSMDFSTVIFDTAPTGHTLRLL 54


>SB_24393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 276 LSNPLTFVGTLENFWSNASEILWAGSVDMINTDSRTFDS 160
           +SN L   GT E  +  A E +WAG  ++I+ +S+TF S
Sbjct: 28  VSNNLELNGTAELIFHEAKERVWAGLSNVIDFNSKTFFS 66


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 365  DKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLR 508
            D+GV +   GA PG+D     AE+ + ++  N +A     A  GH+ R
Sbjct: 899  DRGVFR---GALPGVDNMREQAELNEELESKNTAATKIQAAYRGHSTR 943


>SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05)
          Length = 872

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +2

Query: 290 EIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVK-GMNFS 466
           + D N   TE+P+E    E++ +  D G + + +   P   E++S  EV  LV+      
Sbjct: 260 QTDTNQDDTEIPDELPRKETDRLSADLGELGQDLE--PIRTESVSTQEVRILVESSFEIE 317

Query: 467 AVVFDTAPTGHTLRLL 514
           AV  +  P  H +RL+
Sbjct: 318 AVACEGVPLVHCVRLM 333


>SB_31842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +2

Query: 290 EIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVK-GMNFS 466
           + D N   TE+P+E    E++ +  D G + + +   P   E++S  EV  LV+      
Sbjct: 41  QTDTNQDDTEIPDELPRKETDRLSADLGELGQDLE--PIRTESVSTQEVRILVESSFEIE 98

Query: 467 AVVFDTAPTGHTLRLL 514
           AV  +  P  H +RL+
Sbjct: 99  AVACEGVPLVHCVRLM 114


>SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 315 VNPTFGSISIANRLSNPLTFVGTLENFWSNASEI 214
           + P   S +I N LSN   + G LE +W N++ I
Sbjct: 198 MQPYIPSDTILNFLSNRTAYGGVLERYWLNSNGI 231


>SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)
          Length = 421

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 237 NFLKYQQRLKGLTTYSLWRLIRMLD*QSCLKNILKEN 347
           NF+ Y++    +   +LWRL+R       + NI++++
Sbjct: 57  NFIDYEKAFDSVDRQTLWRLLRHYGVSEKITNIIRKS 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,760,624
Number of Sequences: 59808
Number of extensions: 246194
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)