Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31651
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   10.0 

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 350 EAMRLDKGVMQEIVGAFPGI 409
           EA+RLD   + +I G F  I
Sbjct: 529 EAIRLDGNFLSDINGVFTSI 548


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 FLKYQQRLKGLTTYSLWRLIRMLD 311
           F K  QR+K    Y +WR  R+++
Sbjct: 132 FKKSVQRIKPYDEYYVWRDARIVN 155


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 483 VSNTTALKFMPFTSFI 436
           ++N  ALKF PF   I
Sbjct: 878 INNKYALKFFPFDKHI 893


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,342
Number of Sequences: 438
Number of extensions: 2472
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)