Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31649
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0846 - 21983581-21986055 30 0.49
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 29 0.86
07_03_0626 + 20060013-20060273,20061017-20061274 27 3.5
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 3.5
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 27 6.1
05_07_0141 - 27985539-27985609,27985692-27985749,27986249-279862... 27 6.1
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 27 6.1
01_01_0785 - 6076089-6077615 27 6.1
02_02_0240 + 8196140-8198248,8198381-8198650 26 8.1
>07_03_0846 - 21983581-21986055
Length = 824
Score = 30.3 bits (65), Expect = 0.49
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -1
Query: 363 DLRDPNGLXRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 214
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 29.5 bits (63), Expect = 0.86
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 221 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRXSPFGS 355
A+ A +GK + E E S+QCD T + +S RE +R +P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSREKKR-NPYAA 473
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 233 RLGWLRP*RRSGIIP 189
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 240 ARICSLWSPESREALNNVTLLVAFRIQNARRDVXA 344
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 197 IIPRMVASHHRPLGRVHEPNVRNCGSSRT 111
++P A+H LGR H+ N + GS+ T
Sbjct: 535 LVPPTNAAHQPSLGRDHDSNKKTSGSAGT 563
>05_07_0141 -
27985539-27985609,27985692-27985749,27986249-27986296,
27986455-27986517,27986599-27986722,27990021-27990358
Length = 233
Score = 26.6 bits (56), Expect = 6.1
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +1
Query: 115 REEPQFRTFGSCTRPSGR---WCEATXRGIMPERL*GRSQPSRIRQGYAHCG 261
RE + R GS R + R W EA G +R G P R R+G+ G
Sbjct: 39 RESRRQRRNGSVVRLAARRGGWMEAVPAGEERDRRSGDVDPRRRRRGFRRAG 90
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -1
Query: 321 FECETRLVKSHCLE---PPDSRGSTVSISLPDSARLASALEAFRH 196
F + RL K HCLE P+S+ S+V +++ + A+ E H
Sbjct: 524 FMWDMRLSKKHCLELIGHPESQFSSVKLNIDNRTVFAATKEGTVH 568
>01_01_0785 - 6076089-6077615
Length = 508
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 240 ARICSLWSPESREALNNVTLLVAFRIQNARRDVXAH 347
A + SLWSPES E + + Q R+V H
Sbjct: 336 AEVASLWSPESGEPITAEKIAEMKYTQAVAREVVRH 371
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 191 PRMVASHHRPLGRVHEP 141
P VA+H RPLG +H P
Sbjct: 36 PPTVATHTRPLGIIHPP 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,989,012
Number of Sequences: 37544
Number of extensions: 167180
Number of successful extensions: 390
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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