Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31649
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40185| Best HMM Match : WD40 (HMM E-Value=0)                        28   2.1  
SB_43122| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_9060| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.3  

>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 503

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 106 CSVREEPQFRTFGSCTRPSG 165
           CS R  P+ R F +CT PSG
Sbjct: 437 CSARTPPRRRPFTACTSPSG 456


>SB_43122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 16 PSKGXRELGLDRRET 60
          P+   RELGLDRRET
Sbjct: 35 PTNRERELGLDRRET 49


>SB_9060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 35

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 16 PSKGXRELGLDRRET 60
          P+   RELGLDRRET
Sbjct: 20 PTNRERELGLDRRET 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,241,912
Number of Sequences: 59808
Number of extensions: 176326
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)