Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31649
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   3.9  
At4g35730.1 68417.m05071 expressed protein  contains Pfam profil...    26   9.0  
At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy...    26   9.0  

>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 213 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVXAHLD 353
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At4g35730.1 68417.m05071 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 430

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 273 DSRGSTVSISLPDSARLASALEAFRHN 193
           DS G  V   LPD   LA+  EA RH+
Sbjct: 399 DSSGHQVHPKLPDYDILAARFEAIRHS 425


>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 544

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 307 RFAFKTRDATSKPIWIAEID 366
           R A  T  AT  PIW+ EID
Sbjct: 398 RSALDTLGATGLPIWLTEID 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,014,359
Number of Sequences: 28952
Number of extensions: 124933
Number of successful extensions: 266
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)