Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31640
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 272 3e-74
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 142 3e-35
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 132 4e-32
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 106 2e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 80 2e-16
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 71 8e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 68 1e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 6e-10
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 40 3e-04
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.7
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 5.1
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 6.7
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 8.9
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 272 bits (666), Expect = 3e-74
Identities = 126/145 (86%), Positives = 135/145 (93%)
Frame = +1
Query: 82 REKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC 261
+EKLCYVALDFEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQPS LG+E+
Sbjct: 213 KEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENA 272
Query: 262 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 441
GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+AP
Sbjct: 273 GIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAP 332
Query: 442 PERKYSVWIGGSILASLSTFQQMWI 516
PERKYSVWIGGSILASLSTFQQMWI
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWI 357
Score = 50.8 bits (116), Expect = 1e-07
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +3
Query: 3 DYLMKILTXRGYSFTTTAEREIVRDIK 83
DYLMKIL RGY+F+TTAEREIVRDIK
Sbjct: 187 DYLMKILMERGYTFSTTAEREIVRDIK 213
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 142 bits (344), Expect = 3e-35
Identities = 64/145 (44%), Positives = 94/145 (64%)
Frame = +1
Query: 82 REKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC 261
+EK CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G E+
Sbjct: 218 KEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEAS 277
Query: 262 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 441
G+H ++ SI+ D+D+R LY+N V+SGG+T+ G +R E+ A++ ++KI A
Sbjct: 278 GLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYAS 337
Query: 442 PERKYSVWIGGSILASLSTFQQMWI 516
PER ++ W+GGSILASLSTF+++ I
Sbjct: 338 PERMHNAWLGGSILASLSTFRRLLI 362
Score = 29.5 bits (63), Expect = 0.31
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 3 DYLMKILTXRGYSFTTTAEREIVRDIK 83
DYL L G+ ++AE+EIVR+IK
Sbjct: 192 DYLQLQLRKSGHELVSSAEKEIVREIK 218
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 132 bits (318), Expect = 4e-32
Identities = 66/157 (42%), Positives = 101/157 (64%), Gaps = 12/157 (7%)
Frame = +1
Query: 82 REKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC 261
+EKLCYV+ D E + + +T L ++Y LPDG+VI +G+ER+ CPE LFQP +G E
Sbjct: 213 KEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQP 272
Query: 262 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL--------APST 417
G+ E ++++I DVDIRK LY V+SGG++MY G+ R++KEI L P+
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPAR 332
Query: 418 I---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWI 516
+ K+KI P R+++V+IGG++LA ++ MW+
Sbjct: 333 LPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWV 369
Score = 30.7 bits (66), Expect = 0.14
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 6 YLMKILTXRGYSFTTTAEREIVRDIK 83
YL+ +L +GY+F TA+ E VR++K
Sbjct: 188 YLISLLLRKGYAFNRTADFETVREMK 213
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 106 bits (254), Expect = 2e-24
Identities = 58/139 (41%), Positives = 77/139 (55%), Gaps = 11/139 (7%)
Frame = +1
Query: 133 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC---------GIHETVYN 285
A AS+ K +E PDG G ERFR E LF PSF S G+HE VY
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 286 SIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKII-APPERKYS 459
SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S I + +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390
Query: 460 VWIGGSILASLSTFQQMWI 516
VW GGSILASL FQ +W+
Sbjct: 391 VWFGGSILASLDNFQHLWV 409
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 80.2 bits (189), Expect = 2e-16
Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Frame = +1
Query: 262 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 441
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 442 ---PERKYSVWIGGSILASLSTFQQMWI 516
ER Y+ W+GGSIL+SL TF Q+WI
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWI 412
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 71.3 bits (167), Expect = 8e-14
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 20/142 (14%)
Frame = +1
Query: 82 REKLCYVALDFEQEMATAAAS--TSLEKSYELPD------------------GQVITIGN 201
+E +CYV+ +F+++M + LE Y LPD QV+ + N
Sbjct: 219 KESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSN 278
Query: 202 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 381
ERF PE LF PS + + GI E V S+ +I+ L N V GG +PG R
Sbjct: 279 ERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKR 338
Query: 382 MQKEITALAPSTIKIKIIAPPE 447
+ E+ +LAP+ ++K+ P +
Sbjct: 339 LSSELRSLAPANWEVKVFEPSD 360
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 67.7 bits (158), Expect = 1e-12
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Frame = +1
Query: 40 RSPPPLRGKSFVTSREKLCYVALDFEQEMATAAASTS--LEKSYELPDGQVITI--GNER 207
R+ P K+ +E+ CYV D +E + L+ + E G TI G ER
Sbjct: 227 RNEPDSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFER 286
Query: 208 FRCPEALFQPSFLGMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 384
F PE F P + + E V N + +D+RK LY N V+SGG+T++ +R+
Sbjct: 287 FLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRL 346
Query: 385 QKEITALAPSTI--------------KIKIIAPPERKYSVWIGGSILASLSTF 501
Q+++ + I + +I+ ++ +VW GGS+LA F
Sbjct: 347 QRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.4 bits (135), Expect = 6e-10
Identities = 25/92 (27%), Positives = 50/92 (54%)
Frame = +1
Query: 202 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 381
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 382 MQKEITALAPSTIKIKIIAPPERKYSVWIGGS 477
+++E+T++ P I + W G S
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGAS 685
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 39.5 bits (88), Expect = 3e-04
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +1
Query: 316 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 486
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 487 SLSTFQQMWI 516
+ ++WI
Sbjct: 587 RIRIVSELWI 596
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 388 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 498
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 267 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 395
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 414 DHQDQDHRSPREEVLRMDRWIHPG 485
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 76 TSREKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNE-RFRCP 219
T CYV+ +E + + SL SY +PD + I + R+ P
Sbjct: 33 TEHGVFCYVSRPLTKERSCSHPYISLGSSYGIPDAENIEYPRDARYHSP 81
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 8.9
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +1
Query: 184 VITIGNERFRCPEALFQPSFLGMESC-GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTM 360
++T+ NE + E L S S E+ + CD+D ++ + + T +
Sbjct: 136 LVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLAFTDDTNL 192
Query: 361 YPGIADRMQKEITALAPSTIKIKIIAPPERKYS 459
+P AD I ++K A RKYS
Sbjct: 193 FPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 455 YFLSGGAMILILMVEGARAVISFCILSAIPGY 360
Y +SGGA + +A +S CI +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,757
Number of Sequences: 5004
Number of extensions: 34462
Number of successful extensions: 131
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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