Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31636
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05)                  35   0.035
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)                33   0.14 
SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)                33   0.14 
SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)                   32   0.24 
SB_50692| Best HMM Match : efhand (HMM E-Value=1.5e-15)                32   0.32 
SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)                        29   1.7  
SB_43877| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  

>SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05)
          Length = 69

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = +3

Query: 3   LMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVM 152
           L+  AEL H L +LG+KL D EV  +    +  ED+ G + Y  F++ VM
Sbjct: 21  LIGAAELRHLLASLGDKLSDEEVDNL---MVGFEDNQGQVFYEDFVRAVM 67


>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
          Length = 659

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 15  AELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPY 128
           AEL H +  LGEKL D EV E+ ++     D DG + Y
Sbjct: 93  AELRHVMTNLGEKLTDEEVDEMIREA--DIDGDGQVNY 128


>SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)
          Length = 250

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 15  AELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPY 128
           AEL H +  LGEKL D EV E+ ++     D DG + Y
Sbjct: 93  AELRHVMTNLGEKLTDEEVDEMIREA--DIDGDGQVNY 128


>SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 15  AELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPY 128
           AEL H +  LGEKL D EV E+ ++     D DG + Y
Sbjct: 104 AELRHVMTNLGEKLTDEEVDEMIREA--DIDGDGQVNY 139


>SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)
          Length = 213

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 15  AELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPY 128
           AEL H +  LGEKL D EV E+  +     D DG + Y
Sbjct: 68  AELRHVMTNLGEKLTDEEVEEMIMEA--DIDGDGQVNY 103


>SB_50692| Best HMM Match : efhand (HMM E-Value=1.5e-15)
          Length = 150

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = +3

Query: 18  ELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVM 152
           EL H L  LGEKL DSEV  + +     ED  G I    F+  V+
Sbjct: 107 ELRHILTTLGEKLTDSEVDSLIQGL---EDKQGQIDCEEFILSVL 148


>SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)
          Length = 646

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 6   MLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPY 128
           +L AEL   L++LGEKL D EV  +       +D  G I Y
Sbjct: 606 VLAAELRSVLMSLGEKLSDEEVTTLFAPV---DDSSGHINY 643


>SB_43877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 81  TKDCMDPEDDDGMIPYAAFLKKVMA*KTSQLVISLVIRS 197
           +KD +D    D   PY   LK + A   SQLV S ++ S
Sbjct: 21  SKDALDAITGDHFNPYCKDLKDISAAPKSQLVASAILLS 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,035,660
Number of Sequences: 59808
Number of extensions: 241687
Number of successful extensions: 757
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)