Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31636
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00050-10|AAA50701.1| 153|Caenorhabditis elegans Myosin light c... 48 5e-06
L03412-1|AAA28112.1| 153|Caenorhabditis elegans alkali myosin l... 48 5e-06
AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin pr... 35 0.030
AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin pr... 35 0.030
AC084159-17|AAK39364.1| 116|Caenorhabditis elegans Hypothetical... 33 0.16
Z81120-4|CAB03346.1| 142|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z70267-5|CAA94209.2| 143|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL032644-7|CAA21670.1| 354|Caenorhabditis elegans Hypothetical ... 29 2.6
AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily a... 27 6.0
AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium chann... 27 8.0
>U00050-10|AAA50701.1| 153|Caenorhabditis elegans Myosin light
chain protein 3, isoforma protein.
Length = 153
Score = 47.6 bits (108), Expect = 5e-06
Identities = 25/50 (50%), Positives = 32/50 (64%)
Frame = +3
Query: 6 MLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVMA 155
+L AEL H LLALGE+L E E+ K ED +GM+ Y F+KKV+A
Sbjct: 100 ILAAELRHILLALGERLSADEADELLKGV---EDGEGMVKYEDFIKKVLA 146
>L03412-1|AAA28112.1| 153|Caenorhabditis elegans alkali myosin
light chain protein.
Length = 153
Score = 47.6 bits (108), Expect = 5e-06
Identities = 25/50 (50%), Positives = 32/50 (64%)
Frame = +3
Query: 6 MLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVMA 155
+L AEL H LLALGE+L E E+ K ED +GM+ Y F+KKV+A
Sbjct: 100 ILAAELRHILLALGERLSADEADELLKGV---EDGEGMVKYEDFIKKVLA 146
>AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin
protein.
Length = 149
Score = 35.1 bits (77), Expect = 0.030
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 15 AELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFL 140
AEL H + LGEKL D EV E+ ++ D DG + Y F+
Sbjct: 104 AELRHVMTNLGEKLTDEEVDEMIREA--DIDGDGQVNYEEFV 143
>AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin
protein 1 protein.
Length = 149
Score = 35.1 bits (77), Expect = 0.030
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 15 AELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFL 140
AEL H + LGEKL D EV E+ ++ D DG + Y F+
Sbjct: 104 AELRHVMTNLGEKLTDEEVDEMIREA--DIDGDGQVNYEEFV 143
>AC084159-17|AAK39364.1| 116|Caenorhabditis elegans Hypothetical
protein Y73B3A.12 protein.
Length = 116
Score = 32.7 bits (71), Expect = 0.16
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 15 AELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAF 137
AEL H + LGEKL D EV E+ ++ D DG I +F
Sbjct: 53 AELRHVMTNLGEKLTDEEVDEMIREA--DIDGDGQIMRVSF 91
>Z81120-4|CAB03346.1| 142|Caenorhabditis elegans Hypothetical
protein T12D8.6 protein.
Length = 142
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 15 AELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVM 152
AEL H L LGE+L D +V ++ D G + + F++ VM
Sbjct: 98 AELRHLLTTLGERLSDEDVDQLLS---GHNDSHGNVNISDFVRAVM 140
>Z70267-5|CAA94209.2| 143|Caenorhabditis elegans Hypothetical
protein K04C1.4 protein.
Length = 143
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 15 AELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVM 152
AEL L +G+KL D E ++ ++D+G I F+K +M
Sbjct: 101 AELRQVLTTMGDKLSDEEFDKLVAG----QEDNGKIKIETFVKTIM 142
>AL032644-7|CAA21670.1| 354|Caenorhabditis elegans Hypothetical
protein Y51H1A.7 protein.
Length = 354
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 310 LRAPPEELSPPRALPAPVPQSRASV 236
LRAP EE PP A APVP ++
Sbjct: 211 LRAPLEEEKPPVATMAPVPDEHKAI 235
>AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily
assigned gene nameprotein 123 protein.
Length = 655
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 308 QPARAPSHVDIPYNILDTDKPLFLYEQHNIN 400
+ A PS++ + N LD+D+ + YE H+ +
Sbjct: 37 EKANCPSNISLYVNHLDSDRSVIPYEYHSFD 67
>AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium channel,
beta subunit protein1 protein.
Length = 526
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 325 GSAGWLRAPPEELSPPRALPAPVPQSRAS 239
GS G ++ P++ P ++ P P PQ + S
Sbjct: 473 GSYGGMQQQPQQQQPMQSAPPPAPQRQTS 501
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,093,489
Number of Sequences: 27780
Number of extensions: 174679
Number of successful extensions: 662
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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