Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31635
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180...    29   1.4  
09_04_0269 + 16265191-16265472,16265574-16266149                       27   10.0 
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116...    27   10.0 

>06_01_0237 -
           1808203-1809159,1809246-1809399,1809488-1809636,
           1809715-1809997,1810087-1810192,1810293-1810383,
           1810779-1811270
          Length = 743

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 85  FYISYSHDQS*VRLNVL*LCGVYFVASSKSIGGGECALPPHQP-SHLV 225
           F++   + ++ +R++ L   GV +V +  SIG GE   P HQP  HLV
Sbjct: 515 FFVFTDYMRAAMRISALCEAGVIYVMTHDSIGLGEDG-PTHQPIEHLV 561


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 184 GECALPPHQPSHLVRC 231
           G+CA+  ++P HLVRC
Sbjct: 109 GDCAVQMNRPIHLVRC 124


>05_06_0106 -
           25611239-25611295,25611388-25611477,25611582-25611669,
           25611757-25611836,25611968-25612120,25612403-25612546,
           25612633-25612884,25612985-25613116,25613207-25613287,
           25613368-25613488,25613930-25614025,25614195-25614298,
           25614481-25614567,25614690-25614803,25614871-25614930,
           25615007-25615102,25615316-25615366,25615457-25615562,
           25615642-25615713,25616117-25616172,25616446-25616508,
           25616636-25616764
          Length = 743

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +2

Query: 71  IYSFVFTFHIHMINLKFGLMFYSSV 145
           I++ +FTF++++  L  G +FY+++
Sbjct: 179 IFALIFTFYLYVKTLNTGSLFYATL 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,020,411
Number of Sequences: 37544
Number of extensions: 166661
Number of successful extensions: 281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)