Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31635
         (469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45290.1 68415.m05637 transketolase, putative strong similari...    28   3.6  
At3g60750.1 68416.m06796 transketolase, putative strong similari...    27   6.3  
At1g71390.1 68414.m08243 disease resistance family protein / LRR...    27   6.3  
At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit...    27   8.4  

>At2g45290.1 68415.m05637 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 85  FYISYSHDQS*VRLNVL*LCGVYFVASSKSIGGGECALPPHQP-SHL 222
           F++   + ++ +R++ L   GV +V +  SIG GE   P HQP  HL
Sbjct: 512 FFVFTDYMRAAMRISALSEAGVIYVMTHDSIGLGEDG-PTHQPIEHL 557


>At3g60750.1 68416.m06796 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 85  FYISYSHDQS*VRLNVL*LCGVYFVASSKSIGGGECALPPHQP 213
           F++   + +  +R++ L   GV +V +  SIG GE   P HQP
Sbjct: 512 FFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDG-PTHQP 553


>At1g71390.1 68414.m08243 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5B
           [Lycopersicon esculentum] gi|3894391|gb|AAC78595
          Length = 784

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 267 LLGFSENNHLHSAPD*MTWLMRR*STFTTANAFR*SYKIYSTE 139
           + GFS N      P   +WL R  ST  + N+F    KIYS E
Sbjct: 346 IFGFSNNKLEGEVP---SWLWRLSSTMLSHNSFSSFEKIYSKE 385


>At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit
           family protein similar to SP|P39007 Oligosaccharyl
           transferase STT3 subunit {Saccharomyces cerevisiae};
           contains Pfam profile PF02516: Oligosaccharyl
           transferase STT3 subunit
          Length = 779

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +2

Query: 71  IYSFVFTFHIHMINLKFGLMFYSSV 145
           I++ +FTF++++  L  G +FY+++
Sbjct: 178 IFALIFTFYLYIKTLNTGSLFYATL 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,576,948
Number of Sequences: 28952
Number of extensions: 147720
Number of successful extensions: 260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)