Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31626
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    42   0.006
UniRef50_Q8SV02 Cluster: Putative uncharacterized protein ECU07_...    33   5.1  
UniRef50_Q3S2X9 Cluster: Gly; n=2; Streptococcus agalactiae|Rep:...    32   6.8  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 42.3 bits (95), Expect = 0.006
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -2

Query: 356 AGWWYLPARTHKRSYHK 306
           A WWYLPARTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q8SV02 Cluster: Putative uncharacterized protein
           ECU07_0900; n=1; Encephalitozoon cuniculi|Rep: Putative
           uncharacterized protein ECU07_0900 - Encephalitozoon
           cuniculi
          Length = 372

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 394 SNRNALLLHGRNRQGGGTYPRGL 326
           + RNALL+HG N  G  TY RGL
Sbjct: 112 TKRNALLVHGFNGSGNSTYMRGL 134


>UniRef50_Q3S2X9 Cluster: Gly; n=2; Streptococcus agalactiae|Rep:
           Gly - Streptococcus agalactiae
          Length = 570

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 61  HDVYHMIAFNMAFKIYIKMAFSYITFYI*DMIGEWSMCNI-MSSRHQ*ISNTS-FRTSLQ 234
           HD    I   ++ K++ K  F+ ITF + D+ GE+++ N+ + SRH   S+   + TS  
Sbjct: 435 HDNLKQIFPLLSMKLFRKSLFNNITFPLEDLTGEYTLYNVYLLSRHITFSHIGLYITSQV 494

Query: 235 FGQT 246
           F  T
Sbjct: 495 FSHT 498


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,107,155
Number of Sequences: 1657284
Number of extensions: 10178042
Number of successful extensions: 19819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19815
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)