Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31626
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         29   2.9  
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    27   6.8  
01_06_1749 - 39636951-39638102                                         27   8.9  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 400 HPSNRNALLLHGRNRQGGGTYPRGLTRGPTTNR 302
           H ++    LL GR R GGG + RGL   P  +R
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSR 314


>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 382 RFGLKGGAAVVTILRS*NLYLKVGGAFTL*MSMGSSNHLTSG 507
           + G+ G   V+   R   + L +GG     ++MG + HL +G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 422 SIVTTAAPPFKPKRITA 372
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,211,418
Number of Sequences: 37544
Number of extensions: 295066
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)