Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31626
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)                     27   9.2  
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)
          Length = 465

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +3

Query: 399 WGSRCNYTEILELISQGGWRIYVVD 473
           WGS C +++++ + + GG+ +Y +D
Sbjct: 127 WGSICQWSQMIRVKNCGGFYVYELD 151


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 185 HPDINKLVTRPLEL---LFSLVKRENYVSAVSMLNILVFPLIPIC--GRTSC 325
           H D+  L  + L     L SLV R+N +   S   IL+  LIP+C  G+  C
Sbjct: 588 HDDLLTLFAQSLRQWHNLESLVLRDNAIGFQSKGKILIDALIPLCLKGKLKC 639


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,068,270
Number of Sequences: 59808
Number of extensions: 324167
Number of successful extensions: 508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)