Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31626
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   7.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   10.0 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   10.0 

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 6   HHHLSQNHHPLR 41
           HHHL  +HH L+
Sbjct: 141 HHHLQNHHHHLQ 152


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 182 CHPDINKLVTRPLELLF 232
           CHPDI + V + L+ +F
Sbjct: 366 CHPDIQEKVIQELDEIF 382


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 302 ELGGRLKYSTL 270
           + GGRLKY TL
Sbjct: 99  DFGGRLKYLTL 109


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 302 ELGGRLKYSTL 270
           + GGRLKY TL
Sbjct: 99  DFGGRLKYLTL 109


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 236 LVKRENYVSAVSMLNILVF 292
           + KR+ ++    M+NIL+F
Sbjct: 9   MTKRDVFIEKEQMMNILMF 27


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +1

Query: 43  NNKFFRHDVYHMIAFNMAFKIYIKMAFSYITFYI 144
           + +++ H   +  + ++ FK+  +M F  + +YI
Sbjct: 207 SQQYYGHFAGNFSSISITFKLAREMGFFMMDYYI 240


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -2

Query: 368 RQK*AGWWYLPARTHKRSYHK*ELGGRLKYSTLKQH*RNFRV*PN*REVLK 216
           R+K +GW  L    H   + +     R  +  L  H  NFR  P    +LK
Sbjct: 128 RKKSSGWRKLRNIVHWTPFFQTYKKQRYPWVQLAGHQGNFRAGPTPGTILK 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,996
Number of Sequences: 438
Number of extensions: 3349
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)