Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31626
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    29   2.5  
At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing...    28   4.3  
At4g29780.1 68417.m04241 expressed protein                             27   5.7  
At1g01600.1 68414.m00077 cytochrome P450, putative similar to cy...    27   9.9  

>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
            PROSITE domains, PS00674: AAA-protein family signature
            and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 167  QCVT*CHPDINKLVTRPLELLFSLVKRENYVSAVSMLNI 283
            QCV+     ++KLVTR L L  S +  E    AVS L++
Sbjct: 1797 QCVSILQDSMHKLVTRELRLGRSSITTEGIHDAVSSLSV 1835


>At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing
           enzyme family protein low similarity to cis,cis-muconate
           lactonizing enzyme [Burkholderia sp. TH2] GI:23491535;
           contains Pfam profile: PF01188 Mandelate
           racemase/muconate lactonizing enzyme, C-terminal domain,
           PF02746: Mandelate racemase/muconate lactonizing enzyme,
           N-terminal domain
          Length = 410

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 388 GLKGGAAVVTILRS*NLYLKVGGAFTL*MSMGSSNHLTSG 507
           G+     V+ + RS  + L +GG     ++MG S HL +G
Sbjct: 321 GILESLEVIELARSSGIELMIGGMVETRLAMGFSGHLAAG 360


>At4g29780.1 68417.m04241 expressed protein
          Length = 540

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 240 TKLKRSSKGRVTNLLMSG*HYVTH*PLSDHILYIKCYIGKRHFDVN 103
           TK K  S  ++ N++  G  Y TH P+    +++  Y  KRH + N
Sbjct: 310 TKAKFESVHKIPNVV--GSIYTTHIPIIAPKVHVAAYFNKRHTERN 353


>At1g01600.1 68414.m00077 cytochrome P450, putative similar to
           cytochrome P450 GI:10442763 from [Triticum aestivum]
          Length = 554

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 43  NNKFFRHDVYHMIAFNMAFKIYIKMAFSYI 132
           + KF  HD Y  +AFN   +I +    +Y+
Sbjct: 440 DGKFINHDQYRFVAFNAGPRICLGKDLAYL 469


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,159,568
Number of Sequences: 28952
Number of extensions: 229018
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)