Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31625
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    29   0.53 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    26   2.8  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   3.7  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   3.7  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   3.7  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    25   8.6  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    25   8.6  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 173 SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 316
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 118 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRS 17
           FPVL QI+P  P L +  R F+  S+    SP++
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKA 473


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 152 LSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATIL 27
           +SIL V+GP +  R+  +   G T  G L  +  + SF  +L
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLLSLLTPANSFDEML 255


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 221  DKSLHQLRTAMHHHPPNQERAVNLSILPV 135
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 187 TTTHRIKKELLICQSFRCPGLVRFPVLSQIKP 92
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 215 ICLVNSGNERDSSLLNRRRYL 277
           +CL N    +D  LLNR RY+
Sbjct: 227 LCLWNHAYYKDYGLLNRSRYI 247


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 461 PGPLGQGEHADSFSVARVRPRTSKGI 384
           PG LG    + +  +  V+PRT +G+
Sbjct: 161 PGTLGSRSRSTTSFIRNVKPRTGEGL 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,764
Number of Sequences: 5004
Number of extensions: 40069
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)