Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31625
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46117| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   3e-06
SB_21596| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   5e-05
SB_54484| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   2e-04
SB_47613| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_22783| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.019
SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_30350| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.077
SB_29700| Best HMM Match : DUF551 (HMM E-Value=8.8)                    34   0.077
SB_25769| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.41 
SB_50595| Best HMM Match : Herpes_US9 (HMM E-Value=2.5)                31   0.72 
SB_41723| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.95 
SB_30664| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)                 29   1.7  
SB_48355| Best HMM Match : Herpes_US9 (HMM E-Value=4.7)                29   2.2  
SB_17609| Best HMM Match : Herpes_US9 (HMM E-Value=4.7)                29   2.2  
SB_28753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21)          27   6.7  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)             27   8.9  

>SB_46117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 26/41 (63%), Positives = 27/41 (65%)
 Frame = +1

Query: 385 MPLDVLGRTRATLKESACSPWPRGPGNPLKLLRAGDWGLQL 507
           MPLDVL RTRATL  S   P P G GN +K  RAGD  LQL
Sbjct: 1   MPLDVLDRTRATLTVSRVFPSPEGVGNLVKHRRAGDRSLQL 41


>SB_21596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 26/42 (61%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 385 MPLDVLGRTRATLKESACSPWPR-GPGNPLKLLRAGDWGLQL 507
           MPLDVLGRTRATL  S    + R G GN +K  RAGD  LQL
Sbjct: 1   MPLDVLGRTRATLTVSTSLSFARKGVGNLVKHRRAGDRSLQL 42


>SB_54484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 23/41 (56%), Positives = 26/41 (63%)
 Frame = +1

Query: 385 MPLDVLGRTRATLKESACSPWPRGPGNPLKLLRAGDWGLQL 507
           MPLDVLGRTRATL  S    +  G GN +K  RAGD   +L
Sbjct: 1   MPLDVLGRTRATLTVSTSLSFAGGVGNLVKHRRAGDRSCKL 41


>SB_47613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 24/42 (57%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 385 MPLDVLGRTRATLKESACSPWPR-GPGNPLKLLRAGDWGLQL 507
           MPLDVLGR R TL  S    + R G GN +K  RAGD  LQL
Sbjct: 1   MPLDVLGRPRVTLTVSTSLSFRRKGVGNLVKHRRAGDRSLQL 42


>SB_22783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 24/42 (57%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 385 MPLDVLGRTRA-TLKESACSPWPRGPGNPLKLLRAGDWGLQL 507
           MPLDVLGRTR  T   +   P P G GN +K  RAGD  LQL
Sbjct: 1   MPLDVLGRTRRYTDGVNESFPRPEGVGNLVKHRRAGDRSLQL 42


>SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 431 DSFSVARVRPRTSKGITD 378
           D+ SVARVRPRTSKGITD
Sbjct: 34  DTVSVARVRPRTSKGITD 51


>SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 431 DSFSVARVRPRTSKGITD 378
           D+ SVARVRPRTSKGITD
Sbjct: 132 DTVSVARVRPRTSKGITD 149


>SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 431 DSFSVARVRPRTSKGITD 378
           D+ SVARVRPRTSKGITD
Sbjct: 64  DTVSVARVRPRTSKGITD 81


>SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 431 DSFSVARVRPRTSKGITD 378
           D+ SVARVRPRTSKGITD
Sbjct: 64  DTVSVARVRPRTSKGITD 81


>SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 431 DSFSVARVRPRTSKGITD 378
           D+ SVARVRPRTSKGITD
Sbjct: 64  DTVSVARVRPRTSKGITD 81


>SB_30350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +1

Query: 403 GRTRATLKESACSPWPRGPGNPLKLLRAGDWGLQL 507
           GRTRATL      P P G GN +K  RAGD   +L
Sbjct: 4   GRTRATLTGQRVFPSPEGGGNLVKHRRAGDRSCKL 38


>SB_29700| Best HMM Match : DUF551 (HMM E-Value=8.8)
          Length = 86

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -3

Query: 431 DSFSVARVRPRTSKGITD 378
           D+ SVA VRPRTSKGITD
Sbjct: 64  DTVSVAHVRPRTSKGITD 81


>SB_25769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -3

Query: 431 DSFSVARVRPRTSKGITD 378
           D+ SVARVR +TSKGITD
Sbjct: 64  DTVSVARVRAKTSKGITD 81


>SB_50595| Best HMM Match : Herpes_US9 (HMM E-Value=2.5)
          Length = 101

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 385 MPLDVLGR-TRATLKESACSPWPRGPGNPLKLLRAGDWGLQL 507
           MPLDVLGR  R T   +      +G GN +K  RAGD  LQL
Sbjct: 1   MPLDVLGRHARYTDGVNESFLRRKGVGNLVKHRRAGDRSLQL 42


>SB_41723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +1

Query: 385 MPLDVLGRTRATLKES 432
           MPLDVLGRTRATL  S
Sbjct: 1   MPLDVLGRTRATLTVS 16


>SB_30664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 385 MPLDVLGRTRATL 423
           MPLDVLGRTRATL
Sbjct: 1   MPLDVLGRTRATL 13


>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
          Length = 1197

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 140  PVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFAT 33
            P S PG  S      A  STPG A+ SIP + S +T
Sbjct: 1015 PSSTPGAASSTTPGAAPSSTPGAAMSSIPGATSSST 1050


>SB_48355| Best HMM Match : Herpes_US9 (HMM E-Value=4.7)
          Length = 98

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 396 CPGPHARYTEGIS 434
           C GPHARYT+G++
Sbjct: 2   CSGPHARYTDGVN 14


>SB_17609| Best HMM Match : Herpes_US9 (HMM E-Value=4.7)
          Length = 98

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 396 CPGPHARYTEGIS 434
           C GPHARYT+G++
Sbjct: 2   CSGPHARYTDGVN 14


>SB_28753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 396 CPGPHARYTEGIS 434
           C GPHARYT+G++
Sbjct: 2   CSGPHARYTDGVN 14


>SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21)
          Length = 858

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 20  PGGVWLQS*NLKELTEGHHQEWSLRLNLTQH---GKSHQARTPEGLTD*QLFLDSVGGGA 190
           P   W+ + NLK  + G    WSL   L+     G  H    P+ LTD  L + S+  GA
Sbjct: 475 PDDSWVSTSNLKTASPGEQYSWSLFRALSHMLCIGYGHY--PPQNLTDLWLTVCSMTAGA 532


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 204  LVERFVWLIPVTNETLAC 257
            LV RFV ++PVT+ T AC
Sbjct: 1290 LVARFVRMLPVTHHTAAC 1307


>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
          Length = 1215

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 375  QVCDA-LRCPGPHARYTEGISMFSLA*RPGQPAETP 479
            Q CDA   C  P    TEG+       R G P+ETP
Sbjct: 893  QKCDAGYYCSKPGMNATEGLCQPGYYCRQGSPSETP 928


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,281,180
Number of Sequences: 59808
Number of extensions: 371697
Number of successful extensions: 913
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)