Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31625
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00990.1 68417.m00133 transcription factor jumonji (jmjC) dom...    28   4.2  
At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2...    27   9.6  
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            27   9.6  
At1g78080.1 68414.m09099 AP2 domain-containing transcription fac...    27   9.6  
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot...    27   9.6  

>At4g00990.1 68417.m00133 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 840

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 53  KELTEGHHQEWSLRLNLTQHGKSHQARTPEG 145
           KEL+EG HQE   + N    GK ++ R P G
Sbjct: 238 KELSEGFHQERDGKKN--AEGKGYECRIPAG 266


>At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2.7)
           plant glutamate receptor family, PMID:11379626
          Length = 926

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 182 GGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRN 304
           G  W  L  G + L+ S NER SSL N +  LGVR  + ++
Sbjct: 231 GYVW-LLTDGVMNLLKS-NERGSSLENMQGVLGVRSHIPKS 269


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 215 SLHQLRTAMHHHPPNQERAV 156
           S HQ RT  HHHP N    V
Sbjct: 19  SRHQRRTKSHHHPLNPPNPV 38


>At1g78080.1 68414.m09099 AP2 domain-containing transcription factor
           RAP2.4 identical to AP2 domain containing protein
           GI:2281633 from [Arabidopsis thaliana]
          Length = 334

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -3

Query: 248 SLVRYRN*PDKSLHQLRTAMHHHPPNQERAVNLSILPVSGPGEISRVESN*AAGS--TPG 75
           SL+   N     +HQ+++ +HH  P      N S   +  P  +   +S   AGS    G
Sbjct: 83  SLIGLNNLSSSQIHQIQSQIHHPLPPTHHNNNNSFSNLLSPKPLLMKQSG-VAGSCFAYG 141

Query: 74  GALPSIP 54
             +PS P
Sbjct: 142 SGVPSKP 148


>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 652

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 218 KSLHQLRTAMHHHPPNQERAVNLSILP 138
           K LH L +  H H PN +  +NL   P
Sbjct: 104 KLLHGLNSHSHRHSPNSQSDLNLDQTP 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,805,546
Number of Sequences: 28952
Number of extensions: 244376
Number of successful extensions: 552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)