Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31624
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 29 0.55
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.2
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 27 2.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 3.8
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual 26 3.8
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 5.1
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 5.1
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 25 6.7
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 6.7
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 25 6.7
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 25 8.9
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 28.7 bits (61), Expect = 0.55
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 291 WPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIEKKI 452
WP ++ + KT L W E L + + +GG Q Y + SA +E KK+
Sbjct: 195 WPNVGHLFAGKWKTTLPWRVESPELHAVQVHLGGSSLQWYV-IPSAHSESFKKL 247
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 393 DLQQVYKRLVSAVNEIEKKIPFSHHDR 473
D+QQ+ + +V+A N E+K+ +HH R
Sbjct: 2198 DIQQLERSIVNASNMKEEKMLKNHHSR 2224
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 301 PVGQKR-QALAACRKRSPSLNRKWSSMSCCWVSFDMPVRG 185
P G+KR A+AA + R+P L + + +FD V+G
Sbjct: 43 PPGEKRISAIAAAKTRAPVLGGNFGVWGGLFSTFDCAVKG 82
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +2
Query: 65 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPH 193
P+ VP P P VPV + GQ L PV P LPPH
Sbjct: 671 PVVPEVPSVPQPPAVPVVPEAGQ-LNEPVVP-------PLPPH 705
>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
Length = 484
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 499 VGQNVRKPSRSWCENGIFFSISLTALTSLLYTCCRSP 389
+G +R+ ++SW + LTS++Y+CC++P
Sbjct: 376 IGSLIRQLNKSW---------EVVFLTSVIYSCCKTP 403
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 161 GRAQGHVLPPHRHVEGDPAAAHRRPLPVQGG 253
GR Q VLP DPAA +PLP + G
Sbjct: 513 GRCQSMVLPIMNKWTVDPAAKDVKPLPRKVG 543
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 15 NLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKV 137
N+D A EF++ T S++G N C+ + YK DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 84 PFNPCLTESQYKEMED--KVSGTLSSLEGELKGTFYPLTGMSKET 212
P P L Q + +D K + + E+K FY LTG+ +T
Sbjct: 41 PEAPLLDNEQRQSAQDFIKDNSEIVVSTSEIKNLFYELTGLDPDT 85
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.0 bits (52), Expect = 6.7
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 60 CGRSLEGYPFNPCLTESQYKEMEDKVSGTLSSLEGELKGTFYPLTGMSK-ETQQQLIDD 233
C + P L SQ+ ++ D + L++L+ E F L G + ET+QQLIDD
Sbjct: 771 CSLLKKSRPNERILIFSQFTQVLDILEYVLNTLDLE----FLRLDGSTPVETRQQLIDD 825
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -3
Query: 499 VGQNVRKPSRSWCENGIFFSISLTALTSLLYTCCRSP-PICIEMMRR 362
VG N+ + CE G+ S S + CCR P C+ ++ +
Sbjct: 65 VGSNLNIDGKVECEAGVMDSESGLTASVACCNCCRHPSEACLYILNK 111
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 360 HLRIISMQMGGDLQQVYKRLVSAVNEIEKKIPFS 461
H + + Q GD+ ++ KRL +V +E+KI S
Sbjct: 425 HKKSANAQFSGDVAELRKRLFWSVYCMERKIGIS 458
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,892
Number of Sequences: 5004
Number of extensions: 31306
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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