Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31622
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77340.1 68414.m09007 pentatricopeptide (PPR) repeat-containi...    28   4.3  
At1g66720.1 68414.m07584 S-adenosyl-L-methionine:carboxyl methyl...    27   7.5  

>At1g77340.1 68414.m09007 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 441

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 128 LKCKYVLICY*TTNKVLLTNTRYYKKNCFKTDYTYLKSL 12
           L+C Y L  Y    K     +  + KNCF  D   +KSL
Sbjct: 390 LRCYYKLQKYEEAAKEKKRESTRFSKNCFDVDIAMMKSL 428


>At1g66720.1 68414.m07584 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           defense-related protein cjs1 [Brassica
           carinata][GI:14009292][Mol Plant Pathol (2001)
           2(3):159-169]
          Length = 352

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 201 IQPDDDTIKKKILMLKLFSIFCG--DGYLGDYNFLNSFELID 320
           IQP+ +++  KIL + L S F G    + G    + +FEL++
Sbjct: 285 IQPNGESLDPKILAVSLKSAFGGILSAHFGAEAMMKAFELVE 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,912,229
Number of Sequences: 28952
Number of extensions: 212480
Number of successful extensions: 319
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)