Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31620
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   3.5  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    24   6.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    24   6.2  

>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 199 LQTLEGELSQTGIFFDDQLDERE 267
           ++TLE ELSQ G+   +Q+ + +
Sbjct: 442 VRTLENELSQAGVNLQEQIHQND 464


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 6/27 (22%), Positives = 19/27 (70%)
 Frame = +1

Query: 142 RPVILHQFIPLDLALQKFILQTLEGEL 222
           RP+ + +F+P  + +   ++++L+G++
Sbjct: 174 RPLYVEKFVPFSMEIAVMVVRSLDGKV 200


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 218  SLARQESSSTINLTKEKFEVILDVQQFTPD-EYHGQGVEQHGCRSK 352
            +L  +E S+   L+ EK   IL       D EYH   VE    RSK
Sbjct: 1555 NLLAEEKSAVKRLSTEKESEILQFNSRLADLEYHKSQVESELGRSK 1600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,377
Number of Sequences: 5004
Number of extensions: 21197
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)