Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31620
(360 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0615 - 22761375-22761760,22762218-22765026 29 1.1
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 1.5
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 28 1.9
08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138 27 4.4
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 5.9
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846... 27 5.9
03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509 27 5.9
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126... 27 5.9
10_06_0162 - 11348250-11349531,11349571-11349671 26 7.7
02_05_0180 - 26519845-26520684 26 7.7
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -2
Query: 140 PSSDPCRSAGPVVWRGARCAPSHPTSRETSLVLSTSFL 27
PS DP +A P W+G C+P SR SL L +FL
Sbjct: 49 PSWDPT-AATPCSWQGVTCSPQ---SRVVSLSLPNTFL 82
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -1
Query: 279 ITSNFSFVKLIVEEDSCLAKLALQGLKYEFLKSEVEGNELMEDNRSSFFRPM 124
I S S ++ EEDS LA+ A+QG+K E+ S+ E ++ S F+ +
Sbjct: 846 IQSRSSMIRCSEEEDSRLAEDAMQGMK-EWKSSDSERQGIVLAIEKSIFKDL 896
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 28.3 bits (60), Expect = 1.9
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +1
Query: 52 DVSRLV---G*LGAHRAPLQTTGPALRHGSEEGRPVILHQFIPLDLALQKFILQTLEGEL 222
D+ RLV G +G +A L P +R + GRP+ QFI + + + ++ T+ L
Sbjct: 268 DLERLVLAAGPIGLMQACLDVAVPYVRQREQFGRPIGEFQFIQVQHFVNRRLVPTITSYL 327
Query: 223 SQTGIFFD 246
G D
Sbjct: 328 LMQGKLAD 335
>08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138
Length = 275
Score = 27.1 bits (57), Expect = 4.4
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 70 G*LGAHRAPLQTTGPALRHGSEEGRPV-ILHQFIPLDLALQKFILQTLEGE 219
G A R +TGPA R GRPV +L F +A +LQ L E
Sbjct: 133 GRAAAQRGRRGSTGPASRRQEGGGRPVALLFMFFSWWVAFAGILLQELAPE 183
>04_04_1574 -
34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 38 SIVPMMFRDWWDDWERIERPSRLLDQHFGMG 130
++ P +R W D+E I R +L QH GMG
Sbjct: 872 TLTPYRWR-WLRDYEFITRVDAVLRQHSGMG 901
>04_02_0007 +
8464923-8465155,8466037-8466591,8466645-8467662,
8467768-8468485,8468651-8468937
Length = 936
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 101 WRGARCAPSHPTSRETSLVLSTSFL 27
WRG C+ S+P SR L LS+S L
Sbjct: 125 WRGVTCSSSYP-SRVVHLELSSSHL 148
>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
Length = 332
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 79 GAHRAPLQTTGPALRHGS 132
GA APL TTG AL HG+
Sbjct: 44 GAGTAPLSTTGFALAHGA 61
>01_03_0278 -
14509481-14509506,14510700-14512291,14512547-14512638,
14513030-14514412
Length = 1030
Score = 26.6 bits (56), Expect = 5.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 56 FRDWWDDWERIERPS 100
F+ WWD ER E+PS
Sbjct: 652 FKGWWDKTERQEQPS 666
>10_06_0162 - 11348250-11349531,11349571-11349671
Length = 460
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 155 RITGRPSSDPCRSAGPVVWRGARCAPSHP 69
R RP+ DP A PV+ R A HP
Sbjct: 27 RFRRRPAVDPAAPAAPVLRRTAELLRGHP 55
>02_05_0180 - 26519845-26520684
Length = 279
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 94 ALDALPVIPPVAKHHWYYRHLFYLKFVVS 8
A+ A+ ++P +A+ W HLF L VVS
Sbjct: 21 AVGAVSLLPSLAQAVWEVPHLFLLGLVVS 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,704,844
Number of Sequences: 37544
Number of extensions: 155143
Number of successful extensions: 536
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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