Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31620
         (360 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49842| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)                   27   6.1  
SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)                  26   8.0  

>SB_49842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 225 AKLALQGLKYEFLKSEVEGNELMEDNRSSF 136
           AK +L  + YE+  S  E  E + +NR +F
Sbjct: 26  AKDSLSKIAYEYFSSGAENEETLRENREAF 55


>SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)
          Length = 280

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +2

Query: 185 FRNSYFRPW--RASLARQESSSTINLTKEKFEVIL 283
           FR  YFR W  R S+ R  SSS+ N++KE F+V++
Sbjct: 75  FRRRYFRHWSIRKSM-RCFSSSSRNVSKE-FDVVI 107


>SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
          Length = 313

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 159 MEDNRSSFFRPMPKCWSSSL 100
           M+D R +FFR + KCW  S+
Sbjct: 224 MKDFRQTFFRWLIKCWRRSV 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,427,574
Number of Sequences: 59808
Number of extensions: 158122
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)