Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31620
(360 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46850.1 68418.m05773 expressed protein ; expression support... 29 1.2
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 27 2.8
At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa... 27 3.8
At5g04750.1 68418.m00488 F1F0-ATPase inhibitor protein, putative... 27 5.0
At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transfera... 26 6.6
At3g14415.1 68416.m01824 (S)-2-hydroxy-acid oxidase, peroxisomal... 26 6.6
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 26 8.7
At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD) iden... 26 8.7
At3g14420.2 68416.m01827 (S)-2-hydroxy-acid oxidase, peroxisomal... 26 8.7
At3g14420.1 68416.m01826 (S)-2-hydroxy-acid oxidase, peroxisomal... 26 8.7
At2g04870.1 68415.m00503 hypothetical protein 26 8.7
>At5g46850.1 68418.m05773 expressed protein ; expression supported
by MPSS
Length = 296
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 79 GAHRAPLQTTGPALRHGSEEGRPVILHQFIPLDLALQKFILQTLEGE--LSQTGIFFDDQ 252
G+HR + + L H + R +++ + +PL + F LQ+L+ S +F D
Sbjct: 99 GSHRNLITSIKLLLHHSESQFRELVIVERLPLGVFADPFELQSLQQRRAFSDVSVFGDTN 158
Query: 253 LD 258
L+
Sbjct: 159 LE 160
>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
family protein low similarity to Swift [Xenopus laevis]
GI:14164561; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00533: BRCA1 C
Terminus (BRCT) domain
Length = 991
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 130 SEEGRPVILHQFIPLDLALQKFILQTLEGELSQTGIFFDD 249
S R +L F+PL LA F+LQ G +FDD
Sbjct: 580 SSYSRKFLLITFLPLSLACLAFLLQWRSGVNDSVTQWFDD 619
>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q06003 Goliath
protein (G1 protein) {Drosophila melanogaster}; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 381
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 218 SLARQESSSTIN---LTKEKFEVILDVQQFTPDEYHGQG 325
++A QE +S + LTK KF + D + T DE GQG
Sbjct: 261 AVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQG 299
>At5g04750.1 68418.m00488 F1F0-ATPase inhibitor protein, putative
similar to F1F0-ATPase inhibitor protein [Oryza sativa
(japonica cultivar-group)] gi|5106371|dbj|BAA81661
Length = 94
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 76 LGAHRAPLQTTGPALRHGSEE-GRPVILHQFIPLDLALQKFILQTLE 213
+GA R+ + T GPA+R+ S++ GR + + + +QK + LE
Sbjct: 22 IGASRSVVSTRGPAIRYFSDDKGRVLSEEERAKESMYIQKMERERLE 68
>At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 490
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -1
Query: 288 TSKITSNFSFVKLIVEEDSCLAKLALQGLKYEFLKSEVEGNE 163
TS++ F KLI SC + +++Q ++ + +E N+
Sbjct: 131 TSRLAKKFKIPKLIFHGFSCFSLMSIQVVRESGILKMIESND 172
>At3g14415.1 68416.m01824 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to
(S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate
oxidase, GOX) (Short chain alpha-hydroxy acid oxidase)
[Spinacia oleracea] SWISS-PROT:P05414
Length = 367
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 246 VEEDSCLAKLALQGLKYEFLKSEVEGNELMEDNRSSFFR 130
V E +AK L + Y++ S E +++NR++F R
Sbjct: 6 VTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFAR 44
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 228 LAKLALQGLKYEFLKSEVEGNELMEDNRSSFFRPM 124
L K +GL+Y +++ + +E+ D SFF+P+
Sbjct: 50 LIKFVQKGLQYMEMEANLSNSEVDIDEDFSFFQPL 84
>At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD)
identical to isovaleryl-CoA-dehydrogenase precursor
[Arabidopsis thaliana] GI:5596622
Length = 409
Score = 25.8 bits (54), Expect = 8.7
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +1
Query: 52 DVSRLV---G*LGAHRAPLQTTGPALRHGSEEGRPVILHQFI 168
D+ RLV G LG +A L P +R + GRPV QFI
Sbjct: 268 DLERLVLAAGPLGIMQACLDNVLPYIRQREQFGRPVGEFQFI 309
>At3g14420.2 68416.m01827 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to
(S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate
oxidase, GOX) (Short chain alpha-hydroxy acid oxidase)
[Spinacia oleracea] SWISS-PROT:P05414
Length = 367
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 246 VEEDSCLAKLALQGLKYEFLKSEVEGNELMEDNRSSFFR 130
V E +AK L + Y++ S E +++NR++F R
Sbjct: 6 VTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFAR 44
>At3g14420.1 68416.m01826 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to
(S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate
oxidase, GOX) (Short chain alpha-hydroxy acid oxidase)
[Spinacia oleracea] SWISS-PROT:P05414
Length = 367
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 246 VEEDSCLAKLALQGLKYEFLKSEVEGNELMEDNRSSFFR 130
V E +AK L + Y++ S E +++NR++F R
Sbjct: 6 VTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFAR 44
>At2g04870.1 68415.m00503 hypothetical protein
Length = 72
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 204 LKYEFLKSEVEGNELMEDNRSS 139
L+YE+L S+VE + +NRSS
Sbjct: 16 LEYEYLGSDVESENVGGENRSS 37
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,735,273
Number of Sequences: 28952
Number of extensions: 115754
Number of successful extensions: 379
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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