Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31617
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   2.9  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   5.1  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   5.1  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   6.7  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   8.9  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.9  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   8.9  

>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 8/43 (18%)
 Frame = +2

Query: 371 YKVRQPRLNHKP--FTVTIDIKSDVATNAV---VKM---FLGP 475
           Y+V++PRLN +P  +T   ++++ +A+N V   VK+   FLGP
Sbjct: 554 YEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGP 596


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +2

Query: 281 KMVTFFDHF-DFDAFNTVYFSKEELKSSPHGYKVRQPRLNHKPFTVTIDIKSDVATNAVV 457
           ++V F   F D   +N+ + S + +K        +   L++K F +  +++    TN+ V
Sbjct: 35  ELVVFATAFGDVSIYNSSFKSLQSIKVEDESSIQQILWLDNKTFLLFSNVEGGTGTNSTV 94

Query: 458 KMFLGPKYDENGFP 499
            ++   + DEN  P
Sbjct: 95  IIYAFSQADENEPP 108


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 156 QPSTSSIKGLFNTSSNLNSTRYHTH--KKLFTSLV*KFPTSKST 281
           QPS + + G  + S N NS+R  T+  ++ F+S     P+S  T
Sbjct: 41  QPSLNKLGGFSSASLNFNSSRSSTNDDQQTFSSQSDNLPSSPIT 84


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 163 EGWVPGRSLVEVKSTRNKCVLVERLRS 83
           +GWVPG++L  V+    K  ++  L S
Sbjct: 127 DGWVPGKTLFPVEEAIKKGSIIMNLLS 153


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 407 FTVTIDIKSDVATNAVVKMFLGPKYDENGFPFS 505
           FTV++ +  DVA++  +     P   +N FP S
Sbjct: 115 FTVSVPVDVDVASHVNISSPSAPSLSDNLFPGS 147


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = +2

Query: 26  FLQFYQ--RSYEVNARRVLGAAPKPFNQYTFIPSALDFYQTSARDPAFYQLYKRI 184
           F  F Q  R    N +R+L   P   N Y+   S L  Y+   R  + Y   K +
Sbjct: 15  FFSFKQTKRKKNKNKKRILSILPYYKNSYSDFISVLQMYKVHIRMVSIYIFLKAL 69


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 194 IIEFKQYQVPYTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNT 328
           +   K++  P +  ALH    K+     DKMV ++D    DA +T
Sbjct: 225 VTSLKKHTAPVSCLALHGSEKKVLSGSWDKMVYYWDLNTGDAIST 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,848,646
Number of Sequences: 5004
Number of extensions: 35248
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)