Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31617
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0686 - 5184061-5184267,5184655-5184762,5185405-5185578,518... 29 1.7
03_02_0243 - 6744164-6744415,6744518-6745135 29 2.9
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 29 2.9
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213... 28 3.9
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 28 5.1
03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355... 27 6.8
02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790 27 8.9
01_01_0038 + 288522-288572,289395-289512,289790-289809,290077-29... 27 8.9
>07_01_0686 -
5184061-5184267,5184655-5184762,5185405-5185578,
5185680-5185808,5185891-5186178,5186341-5186570,
5186619-5187516
Length = 677
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 421 NCHSERLVV-KTWLTDLVTVRRALEFFFTEVDGVEGIEVEMVKECDHFVD 275
N +ER+ V KTW++ + + FF + G + + VE+ KE + F D
Sbjct: 442 NHFAERMGVRKTWMSAVRNSPNVVARFFVALHGRKEVNVELKKEAEFFGD 491
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 457 DDGVSGNIRFNINCHSERLVV 395
D VSG+ RF++ C ERLVV
Sbjct: 87 DVRVSGSARFDVQCRGERLVV 107
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -3
Query: 337 EVDGVEGIEVEMVKECDHFVDFDVGNFQTNEVKSFLCVWYLVLFKF 200
E+ ++ EV ++K C F F + Q + +LC+ ++VL +
Sbjct: 409 ELSRLDNPEVSLIKACLVFTTFSMALVQKCRLTQYLCLVFIVLVDY 454
>09_03_0177 -
13120816-13120941,13121032-13121137,13121231-13121305,
13121385-13121461,13122462-13122549,13122638-13122699,
13122807-13122863,13122960-13123049,13123186-13123251,
13123530-13123619,13123711-13123804,13123915-13124213
Length = 409
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 158 AFYQLYKRIVQYIIEFKQYQVPYTQEALHFVGLKI 262
A+ K ++ EF+ ++ P+ EA+H V L+I
Sbjct: 91 AYSSFEKAANAFLQEFRNWETPWAMEAMHTVALEI 125
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 221 PYTQEALHFVGLKISDVKVDKMVTFF 298
PYTQ AL FV L + K+D+ T F
Sbjct: 506 PYTQSALLFVDLGMDVYKIDRACTKF 531
>03_06_0354 -
33333634-33333840,33334106-33334213,33335384-33335557,
33335637-33335765,33335858-33336145,33336257-33336489,
33336607-33337435
Length = 655
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 421 NCHSERLVV-KTWLTDLVTVRRALEFFFTEVDGVEGIEVEMVKECDHFVDFDVGNF 257
N +ER+ V KTW++ + FF ++ + + E+ KE + F D + F
Sbjct: 420 NHFAERMAVRKTWMSAAQKSSNVVARFFVALNSRKEVNAELKKEAEFFGDIVIVPF 475
>02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790
Length = 192
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Frame = +2
Query: 245 FVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSK--EELKSSPHGYKVR-QPRLNHKPFTV 415
F G+ S + +D+ V +FDH D D +++++ E+L KV+ L K F+
Sbjct: 72 FCGVGSSRIYLDEKVDWFDHCDTDTWSSLWLDDFIEQLGYDNSERKVKVYWLLPGKTFSD 131
Query: 416 TI-DIKSDVATNAVVKM 463
+ I D +TN++V +
Sbjct: 132 GLRRINFDASTNSMVAL 148
>01_01_0038 +
288522-288572,289395-289512,289790-289809,290077-290109,
290648-290779,290859-290948,291402-291527
Length = 189
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 138 KLRPGTQPSTSSIKGLFNTS-SNLNSTRYHTHKKLFT 245
+L P +PSTS+ KGL L S+R ++H LF+
Sbjct: 4 RLAPSARPSTSATKGLITGGVILLVSSRKNSHNFLFS 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,769,554
Number of Sequences: 37544
Number of extensions: 217863
Number of successful extensions: 552
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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